Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0085 ATGAAGAAAGGAAGAGATGAATTCGGTGACACAGAAGGCTTAGACATGGTGAAGTGCTTGATGTTACTGTCGAGAGTTGGGGCAAGTAACCCTTCATCAAAGGGTAGAGATGGTGGTTTTAAGTGCAAGACTTGTAACAGAGTGTTCCCTTCTTTTCAAGCTCTTGGAGGGCACAGAGCAAGCCACAAGAAGCCTAAGCTACTCATGATGCCTTTGAAGCGCAACAAGATGCACCCTTGTCCCATTTGTGGAGTCGAGTTTGGAATCGGCCAAGCTCTAGGAGGTCACATGAGAAAGCACAGAGCTCCTGTTCATAAGAATAAGTTTGATTTATGCTTGGACTTGAACTTGACGCCTTTAGAAAATGATCATCTCAACCTCAACTTGACGACAACACCCCTCGTTAATTTTCTTGTTTGA 420 0.4429 MKKGRDEFGDTEGLDMVKCLMLLSRVGASNPSSKGRDGGFKCKTCNRVFPSFQALGGHRASHKKPKLLMMPLKRNKMHPCPICGVEFGIGQALGGHMRKHRAPVHKNKFDLCLDLNLTPLENDHLNLNLTTTPLVNFLV 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0085 139 SMART c2h2final6 40 62 IPR013087 -
Lele12g0085 139 SMART c2h2final6 78 100 IPR013087 -
Lele12g0085 139 PANTHER ZINC FINGER PROTEIN ZAT5 12 124 - -
Lele12g0085 139 Pfam C2H2-type zinc finger 40 65 - -
Lele12g0085 139 Pfam C2H2-type zinc finger 78 103 - -
Lele12g0085 139 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Lele12g0085 139 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lele12g0085 139 SUPERFAMILY beta-beta-alpha zinc fingers 40 100 IPR036236 -
Lele12g0085 139 Gene3D Classic Zinc Finger 38 100 - -
Lele12g0085 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0085 Lele-ChrLele12 725590 726009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0085 1 123 C2H2 Transcription Factor Family AT3G53600 46.154 7.66e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0085 zf-C2H2_6 2.4e-09 CL0361