Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0040 ATGAGGAAGTCGTCGGAGCCCTCTGGAAAAAACAAGCAGCTTAGAAAGGGTTTGTGGTCACCGGAAGAAGATGACAAACTCGTGAGGTACATGCGCAACAATGGACAAGGTTGTTGGAGTGATGTGGCCAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGCCGCCTTCGATGGATCAATTATTTGAGGCCTGACCTTAAACGAGGCGCTTTCTCACCCCAAGAACAACAACTCATTAGCCATTTGCACTCCCTTCTTGGCAACAGATGGTCTCAAATAGCGGCACGCTTGCCAGGTCGAACAGACAATGAGATAAAGAACTTTTGGAATTCCACAATTAAAAGAAGACTCAAGAATTCTTTGGCCACGAAAGACGTCAATATGGAAGGGTTTGTTTCAGCTCAAGATCATCAACACAGCTTTAATGGGCATATGTTGAACTCGTCTCCATCTTCATCCACAGTTGACAGGATTCCTCAGCGAAGCTTGCAATTTGCAGGTGGATTACTCTCAGAAAGTCAAGTGGTTCAGAAAGTGGAGAGCACGTGCCACCCACACACTGCTACCAATGGTTACTTTGAAGACGTAAACAGTGAGAGAGTTGAGGTGGAGAATTCATTATTTGAACAAGAGTTAATGATGGGAATGGGAGAGTGGAATCTGGAGGATCTCATGAAGGATATTCCCTCATCTTCCTTCCTTGATTTTTCAGATCAACACTTCTGCTCCCACCACATATATCCATGA 750 0.4493 MRKSSEPSGKNKQLRKGLWSPEEDDKLVRYMRNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQQLISHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKRRLKNSLATKDVNMEGFVSAQDHQHSFNGHMLNSSPSSSTVDRIPQRSLQFAGGLLSESQVVQKVESTCHPHTATNGYFEDVNSERVEVENSLFEQELMMGMGEWNLEDLMKDIPSSSFLDFSDQHFCSHHIYP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0040 249 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lele12g0040 249 CDD SANT 71 111 IPR001005 -
Lele12g0040 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lele12g0040 249 Gene3D - 13 69 - -
Lele12g0040 249 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele12g0040 249 SMART sant 68 116 IPR001005 -
Lele12g0040 249 SMART sant 15 65 IPR001005 -
Lele12g0040 249 FunFam MYB transcription factor 13 69 - -
Lele12g0040 249 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Lele12g0040 249 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lele12g0040 249 Gene3D - 70 140 - -
Lele12g0040 249 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lele12g0040 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lele12g0040 249 PANTHER MYB DOMAIN PROTEIN 55 9 172 - -
Lele12g0040 249 CDD SANT 19 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0040 Lele-ChrLele12 438763 439610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0040 12 119 MYB Transcription Factor Family AT5G12870 85.185 1.78e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele12g0040 Myb_DNA-binding 1.2e-13 CL0123