Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0037 ATGGCCGAAACTCCTAGCAAATCTCTTCGATCTCCCTCAAAATGCAAACAACAATCCCATTCCGATGCTATTTCCTCACCCTCTGTAAACCCCGTTACCCCACAATCTGTAACTCCTCGCAGATCGACCCGCCGTAGTAAGCCTCCAATTCGCATTGATGAACTTTGTGAACCTCTGTCAGAAACTCCAAATAAGGATAAAGCTCGGGAAAGGAGAAATTTGAACCGGTCTCGTCGATCAATTGATTATGCTGAAGAACCCTGCCAGGATAAAGTGATAACCCGCAGAAATAGAACTAGGGAAAACAGTTCAATCGGCCAAGCACATGAAAAGGAGAGCAACTCTATATCTGCAAAATGCCCGACATCTACTCCAAGGGGCGGAACTTCGAAGAGGAGAAATGATAAAGATTCAAATTCAGCTGAAGTTTCTATCGCCCCAGTGTCGCCTGATCAATCGGAAACCAAGAAGAGGAAGAGGGTTGATGAAAGAAGGGTTGTTACAAGAGCTATGGTTGCAAGAAATAGGAAATCTGAGAAGGGGGAAAAGAGCAATACTAAGAGACGGATGTATTATAAAAAAGTGGTATATGATGGGGGTGAGTTTGAAGTAGGCGATGATGTTTATGTGAAGAGGAGAGAAGACACCGACTCAGATAACGAATGCTCAGAAGTGGAGGAATGTAGGTTGTGTTTTAGTTCTGGAGATGATGTTATGATTGAGTGTGATGATTGTTTAGGTGGCTTTCATTTGAAATGTTTGACTCCACCATTAAAGGAGGTTCCGGAAGGAGATTGGATTTGTGGGTTTTGTGAGGCTCGTAAGATAGGTAGAGACGTTAGCTTTCCCAGGCCTCCGGAGGGTAAGAAGCTAATTAGGACATTAAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCAGCTCACATTGAAAGTATATGGAAAGAAGGGGATGGTACGTATTGTTGTCGTGTCAGGTGGTATGTGATCCCAGAAGAGACAGCTACTGGGAGGCAACCTCATAATCTGAAGAGGGAGCTATATAGAACAAATGATTTTGCAGATATTGAGATGGAATCTATCATTAGACATTGCTTTGTCATGACTCCCAAAGAATTTGCCAAGGCCAACGAGGGAGATGATATTTTCTTTTGTGAATATGAATATGATATTCATTGGCATGCTTTCAAGCGTCTCGCTGAGATTGACAATGATAAAGAGGTTGGTGAAGAATCTGACATTGATGAAGATTGGAATCTTCACAAGGAATCAGACTCTGATACAGATGATGATGTTGAATATGATGCAGAGAATACAAAAAATCCACAACTTCAGTCATCATTAAATCATGCGCCTGCCGCAAATCTGCGCAAGGGACAATTTTTTGGCCTTCAAAAGATAGGCACCAAAAAAATTCCACAGTTTATAAGGAATCACAAGCAAACTGATATTGAGAGAGCAAAGGCCATGCTGTTGCTGGCATCATTACCTAAATTATTACCTTGTAGGAATAAAGAAATGGAGGAGATAACCTCATTTGTAAAAGGTGCCATCTGTGATGATCAATGTCTAGGACGTTGTTTGTATATCCACGGCGTTCCTGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGGAGTTTGAGGGCAGAAGTTGATGCAGGAGCCATAAGACCGTACTGTTTTGTGGAGATTAACGGTTTGAAATTGGCGTCTCCAGAGAACATTTACAGGGTCATATATGAGGCACTAAATGGTCACAGGGTCAGCTGGAAAAAGGCCCTTCACTTGTTAAGTGAGAGATTTGTGGAAGGGAAGAAAACTGGAGAAAAGGCTGATCAGCCATGCATTCTTCTAATTGATGAACTTGATCTTCTTGTAACCAGAAATCAGTCGGTGCTTTATAATATTCTTGATTGGCCTACTAAGCCACATTCCAAACTAATTGTGATAGGGATTGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCTCGCATATCAAGCCGAATGGGCATCCAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCCTTTCAAGTCGCTTGAAGGGAATAGATGTGTTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGGGATGCACGTCGTGCTTTGGAAATATGCAGACGTGCTGCAGAAATTGCAGATTATCGTATTAAGAAGCTGCATTCAAATTCTGACTTAGCTGCAGCAGGAAAGGGACTTGTTGCTATGGCAGATGTTGAAGGTGCCATCCAAGAAATGTTTCAGGCCCCTCATATTCAAGTGATGAAAAGCTGTTCTAGACTTGGTAAAATCTTTTTGACAGCCATGGTACACGAGCTTTATAAAACAGGAATGGGCGAAACCACTTTTGAGAAGTTGGCAATGACGGTATCATGTCTCTGTACCAGCAACGGAGAGGTTTTTCCTGGATATGACACGCTCCTGCAACTTGGGTGTAGGCTGGGCGAATCCAGGATTCTTTTATGTGAAGCAGGTTCCAAGCACAGGTTGCAAAAGTTGCAGCTCAACTTCCCTAGTGATGATGTGGCATTTGCTCTGAGAAACTGCAAGGATTTACCGTGGCTGGCTAAGTATCTATTTTAG 2643 0.4249 MAETPSKSLRSPSKCKQQSHSDAISSPSVNPVTPQSVTPRRSTRRSKPPIRIDELCEPLSETPNKDKARERRNLNRSRRSIDYAEEPCQDKVITRRNRTRENSSIGQAHEKESNSISAKCPTSTPRGGTSKRRNDKDSNSAEVSIAPVSPDQSETKKRKRVDERRVVTRAMVARNRKSEKGEKSNTKRRMYYKKVVYDGGEFEVGDDVYVKRREDTDSDNECSEVEECRLCFSSGDDVMIECDDCLGGFHLKCLTPPLKEVPEGDWICGFCEARKIGRDVSFPRPPEGKKLIRTLREKLLSSDLWAAHIESIWKEGDGTYCCRVRWYVIPEETATGRQPHNLKRELYRTNDFADIEMESIIRHCFVMTPKEFAKANEGDDIFFCEYEYDIHWHAFKRLAEIDNDKEVGEESDIDEDWNLHKESDSDTDDDVEYDAENTKNPQLQSSLNHAPAANLRKGQFFGLQKIGTKKIPQFIRNHKQTDIERAKAMLLLASLPKLLPCRNKEMEEITSFVKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRAEVDAGAIRPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLSERFVEGKKTGEKADQPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEILSSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKLHSNSDLAAAGKGLVAMADVEGAIQEMFQAPHIQVMKSCSRLGKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCTSNGEVFPGYDTLLQLGCRLGESRILLCEAGSKHRLQKLQLNFPSDDVAFALRNCKDLPWLAKYLF 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0037 880 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 332 874 - -
Lele12g0037 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 745 IPR027417 -
Lele12g0037 880 SMART BAH_4 200 399 IPR001025 GO:0003682
Lele12g0037 880 Gene3D - 172 414 IPR043151 -
Lele12g0037 880 ProSiteProfiles BAH domain profile. 283 399 IPR001025 GO:0003682
Lele12g0037 880 FunFam Origin recognition complex subunit 1 291 482 - -
Lele12g0037 880 SMART AAA_5 523 677 IPR003593 -
Lele12g0037 880 MobiDBLite consensus disorder prediction 407 445 - -
Lele12g0037 880 ProSitePatterns Zinc finger PHD-type signature. 228 271 IPR019786 -
Lele12g0037 880 MobiDBLite consensus disorder prediction 1 43 - -
Lele12g0037 880 SMART PHD_3 227 272 IPR001965 -
Lele12g0037 880 FunFam Origin recognition complex subunit 1 223 290 - -
Lele12g0037 880 MobiDBLite consensus disorder prediction 1 165 - -
Lele12g0037 880 MobiDBLite consensus disorder prediction 46 107 - -
Lele12g0037 880 FunFam Origin recognition complex subunit 1 676 768 - -
Lele12g0037 880 Pfam PHD-finger 228 273 IPR019787 -
Lele12g0037 880 Pfam ATPase family associated with various cellular activities (AAA) 528 673 IPR003959 GO:0005524|GO:0016887
Lele12g0037 880 SUPERFAMILY FYVE/PHD zinc finger 214 275 IPR011011 -
Lele12g0037 880 Pfam BAH domain 308 395 IPR001025 GO:0003682
Lele12g0037 880 FunFam Origin recognition complex subunit 1 480 679 - -
Lele12g0037 880 Pfam AAA lid domain 701 734 IPR041083 -
Lele12g0037 880 Gene3D - 677 751 - -
Lele12g0037 880 ProSiteProfiles Zinc finger PHD-type profile. 225 274 IPR019787 -
Lele12g0037 880 Gene3D - 479 676 IPR027417 -
Lele12g0037 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 284 IPR013083 -
Lele12g0037 880 MobiDBLite consensus disorder prediction 108 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0037 Lele-ChrLele12 420847 427440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0037 6 879 Core DNA Replication Machinery Family AT4G14700 58.810 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele12g0037 AAA 9.9e-20 CL0023