Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0036 ATGACGACAATCGCTTCCCAGGGTTATCATCAACCTTCCTCGATCGAGGAAGTTCGAACTCTGTGGATTGGGGATTTGCAGTACTGGGTCGACGAAAATTACCTTAGTCACTGCTTCGCGCACACCGGAGAGGTAGTCTCCATAAAGATCATACGTAACAAGATAACTGGCCAGCCTGAGGGCTATGGATTTGTGGAGTTTGTTTCTCATGCTGCAGCAGAGCGGATTCTGCAAACTTACAATGGGACACAAATGCCTGGAACAGAACAGACTTTCAGGTTGAATTGGGCATCTTTTGGAATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTGGGGGACTTATCACCTGATGTTACAGATTACCTTCTGCAGGAGACATTTCGAGCCCATTATCCTTCAGTTAGAGGTGCTAAAGTAGTGACTGATCCTAATACAGGGCGCTCCAAGGGATATGGGTTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGCTCTATGACTGAAATGAATGGTGTTTATTGCTCAACTAGGCCAATGCGCATCAGTGCTGCAACCCCAAAGAAGACCACAGGTTTCCAACAGCAATATACTGCAGCTAAAGCCATATATCCAATCCCGGCATATACTAGCCCAGTAAATGCAGTTCCACCAGATTATGATATGAATAATACAACTGTTTTTGTTGGTAATTTGGATCTTAATGTCACAGAAGAAGAACTTAAGCAAACCTTTTTGCAATTTGGGGAAATTGTATCCGTCAAGATTCAGGCTGGCAAAGGATGTGGTTTTGTTCAATTTGGGACAAGAACATCTGCTGAAGAAGCCATTCAGAGGATGCAGGCAAAGATGATAGGTCAGCAAGTGGTCCGAATTTCTTGGGGTAGGAGCTTGACTGCTAGACAGGACTTGCCTGGTGGCTGGGGAGCACAGATGGATCCGAGCCAATGGAGTGCCTACTATGGATATGGACAGGGCTATGAAGCCTATGCTTATGGGGCAGCCCAAGATTCTTCCTTGTATGCGTATGGGGCATATGCTGGTTATACACAGTACCCCCAACAGGTTGAAGGCGCTCAGGACATGGCATCTATGACTATGCCTACTATTGAACCAAGGGAGGAGTTATATGATCCCCTGACTGTGCCTGATGTTGACAAGCTGAACGCTGCATATCTATCAGTACATGGAAGCTCCATCTTAGGGCGGTCCCTCTGGCAGAAAACCTCACCCTTCACACAGCCAGCTTAG 1263 0.4656 MTTIASQGYHQPSSIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLSPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRSMTEMNGVYCSTRPMRISAATPKKTTGFQQQYTAAKAIYPIPAYTSPVNAVPPDYDMNNTTVFVGNLDLNVTEEELKQTFLQFGEIVSVKIQAGKGCGFVQFGTRTSAEEAIQRMQAKMIGQQVVRISWGRSLTARQDLPGGWGAQMDPSQWSAYYGYGQGYEAYAYGAAQDSSLYAYGAYAGYTQYPQQVEGAQDMASMTMPTIEPREELYDPLTVPDVDKLNAAYLSVHGSSILGRSLWQKTSPFTQPA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0036 420 CDD RRM3_NGR1_NAM8_like 228 299 - -
Lele12g0036 420 SUPERFAMILY RNA-binding domain, RBD 104 200 IPR035979 GO:0003676
Lele12g0036 420 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Lele12g0036 420 CDD RRM2_SECp43_like 111 190 - -
Lele12g0036 420 Gene3D - 102 206 IPR012677 -
Lele12g0036 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 305 - -
Lele12g0036 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 178 IPR000504 GO:0003723
Lele12g0036 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Lele12g0036 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Lele12g0036 420 SMART rrm1_1 20 95 IPR000504 GO:0003723
Lele12g0036 420 SMART rrm1_1 230 297 IPR000504 GO:0003723
Lele12g0036 420 SMART rrm1_1 113 187 IPR000504 GO:0003723
Lele12g0036 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Lele12g0036 420 FunFam polyadenylate-binding protein RBP45 212 308 - -
Lele12g0036 420 SUPERFAMILY RNA-binding domain, RBD 10 87 IPR035979 GO:0003676
Lele12g0036 420 CDD RRM1_SECp43_like 20 100 - -
Lele12g0036 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Lele12g0036 420 Gene3D - 217 306 IPR012677 -
Lele12g0036 420 Gene3D - 18 98 IPR012677 -
Lele12g0036 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Lele12g0036 420 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Lele12g0036 420 SUPERFAMILY RNA-binding domain, RBD 208 330 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0036 Lele-ChrLele12 416897 419943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0036 20 289 Eukaryotic Initiation Factors Gene Family AT4G34110 26.667 7.38e-22 96.3