Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0031 ATGACCGACCCCAATAATGCCTTCAATTCTCCCTTCCTTTTATCTTCTTCCTCGTCTTGTTCCTTCAACTTTCCTTCTAGTAATCATTATAACTCTCCTCCAAGAGAAGCCCTACCTCTTCTTAACCTAGGCCCTGCAAGACTTGATGATGAAGATGATGTGAAAGAAAAAGCAGGCATGGGGATGGCGTGTAGTTCTTTGAATGATGATCCTGTGACGCTAGCTTTGCAATTACACCTAGGGCTTCCAACAGCAAGTACTTCATCGCCCGACTTGCCTGATTCGAACCCATACTCCTCAGAGACAGTAGTTTCAGACAAAGATGAAGTCACCACTTCATCTTCTGGGTATCTCTCTGATAGGATCACCCGAGGCGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTGATTGGTCCCACACAGTTCTCTTGCCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCTGAATACAGAAGGGGTCCAGAGTCTCTGAGAGGAACACAGCCAACAGCAATGCTAAGGCTTCCATGCTATTGTTGTGCACATGGGTGCAAGAACAACATCGAGCATCCGAGAGCCAAACCTCTGAAGGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGATAAAGCCTTTCATGTGTACAAAATGTTGCAAAGCATTTGCAGTGAGAGGAGATTGGAGAACTCACGAGAAGAACTGTGGGAAGCTGTGGTATTGCTCATGTGGCTCTGACTTCAAGCACAAAAGATCTCTTAAAGATCATATGAAGGCTTTCGGACATGCCCACACGCCTTGTGGTGTGGATCATAACTGTCTCCATCAAGATCATGAGGTGGCCTCTGAAATTGACCACCCAAAATGA 909 0.4576 MTDPNNAFNSPFLLSSSSSCSFNFPSSNHYNSPPREALPLLNLGPARLDDEDDVKEKAGMGMACSSLNDDPVTLALQLHLGLPTASTSSPDLPDSNPYSSETVVSDKDEVTTSSSGYLSDRITRGGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRRGPESLRGTQPTAMLRLPCYCCAHGCKNNIEHPRAKPLKDFRTLQTHYKRKHGIKPFMCTKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHMKAFGHAHTPCGVDHNCLHQDHEVASEIDHPK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0031 302 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Lele12g0031 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Lele12g0031 302 SUPERFAMILY beta-beta-alpha zinc fingers 139 166 IPR036236 -
Lele12g0031 302 Gene3D Classic Zinc Finger 205 279 - -
Lele12g0031 302 FunFam Zinc finger protein WIP2 196 278 - -
Lele12g0031 302 SUPERFAMILY beta-beta-alpha zinc fingers 209 247 IPR036236 -
Lele12g0031 302 Gene3D Classic Zinc Finger 142 165 - -
Lele12g0031 302 MobiDBLite consensus disorder prediction 84 117 - -
Lele12g0031 302 PANTHER ZINC FINGER PROTEIN WIP2 17 297 IPR043584 GO:0003700|GO:0010468
Lele12g0031 302 SMART c2h2final6 253 276 IPR013087 -
Lele12g0031 302 SMART c2h2final6 227 247 IPR013087 -
Lele12g0031 302 SMART c2h2final6 190 222 IPR013087 -
Lele12g0031 302 SMART c2h2final6 143 165 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0031 Lele-ChrLele12 395337 397151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0031 31 299 C2H2 Transcription Factor Family AT1G51220 63.701 1.04e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0031 None None None