Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0027 ATGGATTCAGCAACTCCACCGTCGCCGGAGATGAAACTCGACAAGTTAAGAGCGCTCAAGGTCTTGGGTAAGGGTGCCATGGGTACCGTCTTCCTCGTCAACGACATCGTAGCCGATCCTTCTGCTCGCTGCCCCTTCGCCCTCAAGGTCGTCGAGAAATCCTCCGTCCACAGCAAGCTTGACGCCGACCGTCGTGCCCGCTGGGAAATCCATGTCCTCTCTCGCTTGACTCACCCATTCCTTCCTTCCCTTTTAGGGACATTTGAGAACCGTCAATTCTTGGCCTGGGCAATCCCTTATTGTCCGGGCGGCGACCTCAACGTCCTTCGTTACCGTCAAACTGATCGAGTCTTCGCCCCTTCCGTCATACGCTTCTATTTGGCCGAGATCATCTGTGCTTTAGAGCATCTTCATTCCCTGGGGATCGCTTATCGTGATTTGAAGCCGGAGAATGTCCTTGTCCAGCAGTCCGGTCACGTGACCCTCACGGACTTCGATCTGTCTCGCAATCTCACCCCGAAAACCATCAAAACCTGCACCACCGTCCGACAAAATCTGTCCGATGTTGACCGAAGCAAGCATCGCCGCAATTTCACGCGCTGGATTCCAGTCCCGCCAGACGTTATTCACAAAAAGAAAGGCTTGAAGAAGGCCAAGTCCGCCCGAGTCATCCCGGTGAGCAGGAGGAAAGCGAGTTTCTCAAATGGCGAGCGTTCAAACTCGTTCGTCGGCACAGAAGAGTACGTTTCGCCCGAGATCGTACGCGGCGAGGGACACGAGTTCGCTGTCGACTGGTGGGCCCTGGGCATATTGACGTACGAGATGTTGTATGGCACGACGCCGTTCAAGGGAAGGAACCGGAAAGAGACGTTTCGGAACGTCTTGACTAGAGCGCCAGCATTCGTAGGGAAGCGAACGACATTAACGGACTTGATGGAACGGTTGCTGGAGAAAGATCCCACAAAGCGATTGGGGTACGAGCGCGGTGCCAGCGAGATGAAGGAGCACGATTTCTTCAGAGGGGTCAGGTGGGACCTACTAACGGAGGTGGTAAGGCCGCCGTTTATTCCGTCGAGAGAGGATGGGGAGGGGCAGGAGAGATGGAGTGGAGGCGGGGTGGACATAGGGGAATACTTCGAGAGATTAAGATCGGCGGCTTCGATGCCAGCGTCACCGGAGAAAAGGCGGGATGCATCTTTAACAGAATTCTAA 1212 0.5495 MDSATPPSPEMKLDKLRALKVLGKGAMGTVFLVNDIVADPSARCPFALKVVEKSSVHSKLDADRRARWEIHVLSRLTHPFLPSLLGTFENRQFLAWAIPYCPGGDLNVLRYRQTDRVFAPSVIRFYLAEIICALEHLHSLGIAYRDLKPENVLVQQSGHVTLTDFDLSRNLTPKTIKTCTTVRQNLSDVDRSKHRRNFTRWIPVPPDVIHKKKGLKKAKSARVIPVSRRKASFSNGERSNSFVGTEEYVSPEIVRGEGHEFAVDWWALGILTYEMLYGTTPFKGRNRKETFRNVLTRAPAFVGKRTTLTDLMERLLEKDPTKRLGYERGASEMKEHDFFRGVRWDLLTEVVRPPFIPSREDGEGQERWSGGGVDIGEYFERLRSAASMPASPEKRRDASLTEF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0027 403 Gene3D Transferase(Phosphotransferase) domain 1 105 180 - -
Lele12g0027 403 Gene3D Transferase(Phosphotransferase) domain 1 234 358 - -
Lele12g0027 403 FunFam Serine/threonine-protein kinase UCNL 16 104 - -
Lele12g0027 403 FunFam Serine/threonine-protein kinase OXI1 237 358 - -
Lele12g0027 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lele12g0027 403 SUPERFAMILY Protein kinase-like (PK-like) 13 360 IPR011009 -
Lele12g0027 403 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Lele12g0027 403 SMART serkin_6 16 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0027 403 Gene3D Phosphorylase Kinase; domain 1 16 104 - -
Lele12g0027 403 ProSiteProfiles Protein kinase domain profile. 16 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0027 403 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Lele12g0027 403 Pfam Protein kinase domain 19 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0027 403 Pfam Protein kinase domain 233 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0027 403 PANTHER FLIPPASE KINASE 1-RELATED 11 359 - -
Lele12g0027 403 MobiDBLite consensus disorder prediction 384 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0027 Lele-ChrLele12 372588 373799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0027 11 392 AGC Kinase Gene Family AT3G20830 61.856 1.40e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lele12g0027 Pkinase 3e-31 CL0016