Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0021 ATGTCGTCAACAACCGCAGCCTCCCCCATGTCCGGCCTTGAGTTGCCTGACCTTCAAACTCCGACATTAGACAGGGAGTCTTCGGGGCTTATTCAGTCCATTTCCGAGCACGGAGGCTATGCTTATGTAAGGATGGCGTTCCTGGCGGCCGCCGGTGACTTTCGTGCTGCTGAAGCGGCTCGCGAGATGGCGTGGGAGCAACTCCACTCGGGGCCGTGGCACTCCGTCCTCCCGGTGTGGCGTGATGCGTATTCTATGGCTTGCCTCCTCGTGGCCAAGTGCCATTATAGAATTGGTGAGTTCAAGGAGGCCCTTAGGTCTTTGGATATGGGTCTGATCATGGGAGGGATGCTTCTAAGGAGGGACTTGGACTCTGCTGTTGAGAAAGTTTCGGTGGAGGTCAGAAACATTGGGGTTTCTGAAGATTCCTATGGAGGTTTGGAGAAGCATGAGCATCCACTTGTTCATCGGCAACTTAATAACACTGAGGCGCTCCAACTTCTACCTTCCAAGTCCTTGTCAAGTAAAACTGTAATGAAGAAGATGTCGGCTGTGTCATTGGAAAGATTTCTAGAAGACCATTACCTGTCTCGTTCCCCAGTTATTATCAGCAATTGTATGGATCACTGGCCAGCCAAGGCAAAATGGAATAATACAGATTATTTGAAAAGAGTTGCAGGTGACCGTACAATTCCAGTTGAGGTTGGGAAGAACTACTTATGTGCAGAGTGGAAGCAGGAGCTTATTACATTCTCTGAGTTTCTTCAGCGGATTGAGTCTCCTGGCTGCTCAACTATGGGTCCTACTTATCTTGCTCAGCATCCATTATTTGACCAGATAAATGAGCTTAGAAAAGATATTTGTATACCAGACTATTGTTTTACTGGCGGAGGTGAGCTTAGATCTGTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACGCCATTACACCATGATCCACATCATAATATATTAGCGCAGGTTGTTGGGAAGAAATATATCAGGCTTTACTCTGCATCTTTTTCTGAGGAACTTTACCCCCACACGGAAACCATGCTTTGTAATTCCAGCCAGGTGGATTTAGATGATATAGATGAAATGAAGTTTCCGAAGGTGCAAGACCTGGAATTTGTGGACTGTATTCTAGAAGATGGCGAAATGCTATATATCCCGCCAAGGTGGTGGCATTATGTCCGATCTTTGACAACCAGCTTATCCGTTAGCTTTTGGTGGAGCGAGGGTGGGAGTTCGTGTGCATCCTGA 1263 0.4735 MSSTTAASPMSGLELPDLQTPTLDRESSGLIQSISEHGGYAYVRMAFLAAAGDFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLLVAKCHYRIGEFKEALRSLDMGLIMGGMLLRRDLDSAVEKVSVEVRNIGVSEDSYGGLEKHEHPLVHRQLNNTEALQLLPSKSLSSKTVMKKMSAVSLERFLEDHYLSRSPVIISNCMDHWPAKAKWNNTDYLKRVAGDRTIPVEVGKNYLCAEWKQELITFSEFLQRIESPGCSTMGPTYLAQHPLFDQINELRKDICIPDYCFTGGGELRSVNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASFSEELYPHTETMLCNSSQVDLDDIDEMKFPKVQDLEFVDCILEDGEMLYIPPRWWHYVRSLTTSLSVSFWWSEGGSSCAS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0021 420 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 82 413 - -
Lele12g0021 420 SUPERFAMILY Clavaminate synthase-like 182 412 - -
Lele12g0021 420 Pfam Cupin-like domain 189 413 IPR041667 -
Lele12g0021 420 Gene3D Cupin 178 412 - -
Lele12g0021 420 ProSiteProfiles JmjC domain profile. 263 420 IPR003347 -
Lele12g0021 420 FunFam lysine-specific demethylase JMJ30 178 411 - -
Lele12g0021 420 SMART cupin_9 269 420 IPR003347 -
Lele12g0021 420 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0021 Lele-ChrLele12 339602 343151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0021 189 411 Acyl Lipid Metabolism Gene Families AT3G45880 23.636 3.58e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele12g0021 Cupin_8 8.7e-50 CL0029