Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0008 ATGCCCCGATCACTCAACCCTCCAACAAAAATCGACTTCTCTCGTTTCGTTAGGGTTTCCTTAGGTCTGGCTGGCCCCAGTAACTTCTGGACTGCAATGCCTTTTACGACTAAATCAATCAAGGCTGCTCAGGAAGGCGGTGGCACTGCCAAGGATTTCGAAGATCCTGAGACCCCTTCCAACAATCTATGGGTTGGCAATTTATCGCACGAGGTTACCGAGCCCGATCTTATGGCTCTCTTCGCCCAATACGGCGCTCTAGATAGCGTCACGTCGTATTCCTCTCGGAGTTACGGCTTCGTGTTTTTCAAGCGCGTCGAGGATGCCAAGGCTGCCAAGTACGCGTTACAAGGCACTCTTCTGCGCGGAATTCCCATGAAGATTGAGTTTGCGAGACCGGCAAAGCCCTGTAAACAACTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAAGAAGAACTGGAGGCTGAGTTTCGCAAATTTGGTAAGATTGAGGATTTTAAGTTCATCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTAGATAATGCAATTCATGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCACAATCGTCAAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGGGAAAAATCATGGGCCCTCCTGATTTCTACGCTGGTCAGAAAAGAACACTGCAAACACAGCCTTCAGTTGGGAGGAAGGCAGATAGTCCACCCAGCAATATTTTGTGGATTGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTTAGGAGCGTGGATGAAGCCCGACGTGCCAAAGAGGGTCTTCAAGGTCGCCTTTTCAATGATCCTCGGATTAGTATTATGTATTCAAGCAGTGATTTGGCACGTGGCAAAGATTACCCTGGCATTTTCCCTGGAAGCAAAGGACCTAAACCTGACATGTTCCTAACCGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGACCATAATCGTCCTCTGGTTTCAAATAATTTTCCTGGCCAGATAGCACCTGGTGTTATTGTTGGAACAAATGTACCATTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAACCTTTACTTTCAGGCAGTGAATTCAGTGAACTGGGCACAAACCAAAACTTTCAGGATGGTACCTCCAAAAGTCAAATGGGTCCAAATTGGAAACGGCCTTCTCCTCCAGCACCAGGAATGCTTCATTCTGCACCGGGTATTAGACCTCCTACTAGATCCACATCAAGCCCATGGGATGTGCTCGACATAAACCAGTTTCAGAGGGATTCTAAGCGTTCAAGGATAGATGGTGCTTTACCTGTTGATGATGCTTCCTTTCCTTTAAGGAATGTTGATGATCGTGCAGTAGGGTTAGAGCAATCTTATGGGATGGAGTCAGTTATTGATGGTGGTTCTGGTACATTTGTAAATATCCAAGGGAGGGCTCACCCTGGTCCAGTGGGCACAAGGATCTCAAGTGGATTACCTGCTACTGGTCAAGTTGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGGCTGAGCTTCCAGAAGTTGTCGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTGTTGGTTTTGATATTGTCTTCTTTCTTCCAGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGCTACCTTGGCGCTAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGCACCACTCTATTTTTGGTGCCTCCATCTGATTTCTTAACAAAGGTTTTAAAAGTTGCTGGGCCAGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGTACATCATTGCAACAGCCACTGCCCTTGTCTATACCTTCAACTCAGTATATTGATAGGCAGCAGGTTCCTCCTTCTCAAGTAGAGTATGGTCAGATCCCTGCTAAGGAAGAAGAAACTTTGCCTATGGATTATAATAGATTGTTGCATGATGAGTATAAAGTTCCTTCAAAACCACTTTATCCAGCTACAAGTGGCACCTCTTTAGTTCAGTCTGTACCTTCAGATTATACTTCTAGCAATGCTGCTGCAGTGAGCCAACCTGGAGTTACGTTAACACCTGAACTTATTGCCACTCTAGCCTCTTTGCTTCCTGGAACTACACAATCATCTGCCACTGAGGGTGCCAAGTCAGCAGTAGGCTCCTCAACCATGAAAGCTCCATTTCCTCCAGTTGTGCCCACTGACGGAAACCAATATCATGTATGGAAACAGGACTATCAAATTGGAGATCCATCCAGTCATATCCTTCAACAGGCAGGAGGGAGTACGTACTATCAACCTCATCCACTATCTTCTACTTATGGCCATCCTGGTCAAGTGGTCCCTGGCAGTTCAAATATCCAGGATTCTGCTGCCAGCTTACAGCAGCAGGTTGCCATCTCATCTAGACCCATGAGTAACTTCTTGATGCCTTCTCAAAGCGGACAAGCAACTTTATCCCTCCCAGTGAATCAACCATATCAGGTTGAAGTCTCCTCCAGCTCTCAGAAAGCCTACGGACTGGTGCCGGGAATAGATGCCTCTGTTTTATATAGTTCTCAGGCTTTTCAGAATCCTAATATTTCTGTTTCCTCGTCTAATCAAGTTCATGGTGCTAACCCTTCTCAGCAACAAACTGCTATGCCATATTCAGCAGACAAAGTGAACGCAGAGCCTCCAAATCAGCAGTTTCAAGCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCTGATAAAAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAATCTTCTCCTCCAAATACAGCAGCGGCAGCAGCAGCAACAGCAACAGCAACAAACCCAAGGAGGCCGTGAGGCTGGAAATCAACAATGA 3108 0.4537 MPRSLNPPTKIDFSRFVRVSLGLAGPSNFWTAMPFTTKSIKAAQEGGGTAKDFEDPETPSNNLWVGNLSHEVTEPDLMALFAQYGALDSVTSYSSRSYGFVFFKRVEDAKAAKYALQGTLLRGIPMKIEFARPAKPCKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFIRDRNTAFVEYFNLDNAIHAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLEYGQFQGKIMGPPDFYAGQKRTLQTQPSVGRKADSPPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRISIMYSSSDLARGKDYPGIFPGSKGPKPDMFLTEQTFRPLQMDVFDHNRPLVSNNFPGQIAPGVIVGTNVPLRPFGPQGSLEPLLSGSEFSELGTNQNFQDGTSKSQMGPNWKRPSPPAPGMLHSAPGIRPPTRSTSSPWDVLDINQFQRDSKRSRIDGALPVDDASFPLRNVDDRAVGLEQSYGMESVIDGGSGTFVNIQGRAHPGPVGTRISSGLPATGQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGAELPEVVDCSARTGLDMLTKHYADAVGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPLSIPSTQYIDRQQVPPSQVEYGQIPAKEEETLPMDYNRLLHDEYKVPSKPLYPATSGTSLVQSVPSDYTSSNAAAVSQPGVTLTPELIATLASLLPGTTQSSATEGAKSAVGSSTMKAPFPPVVPTDGNQYHVWKQDYQIGDPSSHILQQAGGSTYYQPHPLSSTYGHPGQVVPGSSNIQDSAASLQQQVAISSRPMSNFLMPSQSGQATLSLPVNQPYQVEVSSSSQKAYGLVPGIDASVLYSSQAFQNPNISVSSSNQVHGANPSQQQTAMPYSADKVNAEPPNQQFQAALQGASQGTSSEVEADKNQRYQSTLQFAANLLLQIQQRQQQQQQQQQTQGGREAGNQQ 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0008 1035 Pfam SPOC domain 548 663 IPR012921 -
Lele12g0008 1035 PANTHER RNA RECOGNITION MOTIF-CONTAINING 54 130 - -
Lele12g0008 1035 CDD RRM3_Spen 260 329 - -
Lele12g0008 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 133 IPR000504 GO:0003723
Lele12g0008 1035 FunFam flowering time control protein FPA 251 344 - -
Lele12g0008 1035 MobiDBLite consensus disorder prediction 940 959 - -
Lele12g0008 1035 MobiDBLite consensus disorder prediction 420 442 - -
Lele12g0008 1035 CDD RRM3_Spen 140 209 - -
Lele12g0008 1035 SMART rrm1_1 259 327 IPR000504 GO:0003723
Lele12g0008 1035 SMART rrm1_1 62 129 IPR000504 GO:0003723
Lele12g0008 1035 SMART rrm1_1 139 206 IPR000504 GO:0003723
Lele12g0008 1035 SUPERFAMILY RNA-binding domain, RBD 243 332 IPR035979 GO:0003676
Lele12g0008 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 210 IPR000504 GO:0003723
Lele12g0008 1035 MobiDBLite consensus disorder prediction 785 808 - -
Lele12g0008 1035 MobiDBLite consensus disorder prediction 420 434 - -
Lele12g0008 1035 FunFam Flowering time control protein FPA 53 135 - -
Lele12g0008 1035 Gene3D - 136 217 IPR012677 -
Lele12g0008 1035 Gene3D - 236 335 IPR012677 -
Lele12g0008 1035 Gene3D - 36 135 IPR012677 -
Lele12g0008 1035 CDD RRM3_Spen 63 132 - -
Lele12g0008 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 331 IPR000504 GO:0003723
Lele12g0008 1035 SUPERFAMILY RNA-binding domain, RBD 58 213 IPR035979 GO:0003676
Lele12g0008 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 204 IPR000504 GO:0003723
Lele12g0008 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 123 IPR000504 GO:0003723
Lele12g0008 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 324 IPR000504 GO:0003723
Lele12g0008 1035 MobiDBLite consensus disorder prediction 1015 1035 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0008 Lele-ChrLele12 208059 216568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0008 43 321 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 8.34e-13 70.5