Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1308 ATGCCTCTTCCGACTAAATCAATCAAGGCTGCTCAAGAAGGCGGTTGCACCGTCAAGGATTTCGAAGATCCTGAGACCCCTTCCAACAATCTATGGGTTGGCAATTTACCGCACGACGTTACCGAGTCCGATCTTATGTCTCTCTTCGCTCAATACGGCGCTCTTGATAGCGTCACGTTGTATTCATCTCGGAATTACGGCTTCGTGTTTTTCAAGCGCGTCGAGGATGCCAAGGCTGCCAAGAACGAGTTACAAGGCACTCTTCTGCGCGGAATTCACATGAAGATTGAATTTGCGAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGTTGTTATAAAGGACGAACTGGAGGCTGAGTTTCACAAATTTGGTAAGATTGAGGATTTTAAGTTCATCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTAGATGATGCAATTCATGCCATGAAAATGATGAATGGAAAGCCTATCGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCACAATCATCAAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGGGAAAAATTATTGGCTCTCCTGATTTCTATGCTGGTCAGAAAAGACCACTGCAAGCACAGCTTTCAGTTGGGATGAAGGCAGATAGTCGACCCAGCAATATTTTGTTGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCTCAACGAGCCAAAGAGGGTCTTCAAGGTCGGCTTTTCAATGATCCTCGGATTACTATCATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCATTTTTCTTGGAAGCAAAGGACCTAAAACTGACATGTTTGTAACTGAGCAAACGTTTCGACCATTACAGATGGATGTGTTTGGCCATAATCGTCCTATGGTTACAAATAATGTTCTTGGCCAGATAGCACCTGGTGTTATTGTTGGACCAAATGTACCATTGAGACCTTTCGGTCCTCATGGTAGTTTTGAACCTTTGCTTTCAGGCAGTGAATTTAATGAACTGGGCACAAACCAAAAGTTTCAGGATGGTAGCTCCAAAAGTCAAATGGGTCCAAATTGGAAACGGCCGTCTCCTCCAGCACCTGGGATGCTCCATTCTGCACCGGGTATTAGACCTACTACTAGATCCACATCTAGCGCATGGGATGTGCTTGACATAAACCAGTTTCAGAGGGATTCTAAGCGTTCAAGGATAGACGGTGCTTTACCTCTTGATGATGCTCCTTTTCCTTTAAGGAACATTGATGATCGTGCATTAGGGTTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGGCTCACCCTGGTCCAGTGGGCACAAGGATCTCAACCGGAGTGCCTGCTACTGCTCAAGTTGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGACTGAGCTTCCAGAAGTTGTTGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTATTGGTTTTGATATTGTCTTCTTTCTACCAGACAGTGAAGATGACTTTGCTTCATACACTGAATTTCTTCGTTACCTTGGCGCTAAAAACCGTGCTGGTGTTGCCAAATGTGTTGATGGTACCACTCTATTTTTGGTGCCTCCATCTGATTTCTTAACAAAGGTTTTAAAAGTCGCAGGGCCAGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCTATGCCAGGTGGTACATCATTGCAACAGCCTCTGCCCTTGTCTATACCTTCGACTCAGTATATTGATAGGAAGCAGGTTCCTCCTTCTCAAGTAGAGTATGGTCAGATCCCTGCAAAGGAGGAAGACGTTTTGTCTATGGATTATAATAGATTGTTGCATGATGAATCTAAAGTTCCTTCAAAACCACTTTATCCAGCAACAAGTGGCGCCTCTTTAGTTCAGTCTGTACCCTCAGATTATACTTGTAGCAATACCGCTGCAGTGACCCAACCTGGAGTTATGTTAACACCTGAGCTTATTGCCACTCTAGCCTCCTTGCTCCCTGGAACTACACAATCATCTGCCACTGATGGTGCCAAGTCAGCAGTAGGATCCTCAAGCATGAAAGCTCCATTTCCTCCACTTGTGGCCACTGACGGAAACCAATCTCATGTATGGAAACAGGACCAACAAATTGCAGATCCATCCAGCCATGTCCTTCAACAGGCAGGGAGTACATACTATCAACCTTATCCACTATCATCTGCTTATGGCCATCCTGGTCAAGTGGTTCCTGGCAGTTCAAACATCCAGGATTCTGCTGCCAGCCTACAGCAGCAGGTTGCCATCTCATCTAGATCCATGAGTAACTTCTTGATGCCTTCTCAAAGCGGACAAGCAACTTTATCCCTCCCAATGAATCAACCATATCAGGTTGATGTCTCCTCCAGCTCTCAGAAAGGCTATGGAGTGGTACCGGGAATAGACGCCTCTGTTTTATATAGTTCTCAGGCTTTTCATAATCCTAATATTTCTGTTTCCTCGTCTAATCAAGTTCATGGTGCTAACCCTTCTCAGCAACAAGCTGCTGTGCCATATTCAGCAGACAAAGTGAACACAGAGACTCCAAATCAGCAGTTTCAAGCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCAGATAAAAACCAGAGCAGCAGCAACAAACCCAAGGAGGGCGCAGGGCTGGAAATCAACAATGAGAATTTTTGTTTAATGGCAGTGCGTGAATGCATGTTCGCGGGCCGCTTAAGGAAGAAAAGAAAGGTCAACTCGTGCTGGTGGTGCCATCCTCGCGAAGGGTTTTGTATTGCTCTTCGAAGAATGTACCTTGACTGCACAACACTTGTTTTAGTATTGATAAATGTGCTTAATTATTGCGATACACAGGATGCCGTCCGAATGCAAATGAATGAATATCATTTATCCCAGTCTGCTGTGCTTTTCACATTAAAACATAGCATAGATCAACCGGAATTAGGAATACCTCACCTGAGGCAGACGCGAGCGGAATCCAGTCAGAGAGCATTCCCGCGAGGGGGAGAGATGGGTTTGGAGTCGTTGGGAGATTTCGCCCTGCACATAATCCTTACCAAACTAGGCCCTGAAGACATTGCCAGAGTTGCTTGTGTGAGCAAGAGGTTTAGGTCTTCGGCTTCCGAAGACTCTCTATGGTTCAGAGCTTGCTCCCAGGATCTCTGTCTCACCAACCCTGTAGATCTTCTCGGAAATCCCCTCCCTTCATTCAAGGTAACTTACCAAATTTGGCGAGAAGCTTTCCTTGTGTATCCTTGGTCCCTTGTGAAACGTGTGAAAAGGTGCTGGGACAGAATAAAGACTTGGCTGACCAATAACTTTCCAGAAGCTGAGGCAACACTTTGTACGGGTGCATCAGAAGATGAGATTAAAGAGTTGGAGATTGCTTTAAAAGTGAAATTACCTCTTCCTACAAGAATACTTTATCGCTTTCAAAATGGGCAAGAATTTACCAGTGAACATCTGGCTAATACTACTCTTGGCAGTTCTTTGGGCCTAATTGGTGGCTACTCTTTCTATAATCATTTGGTAAATGTGTATCTTTTACCTTTAAGTCAGGTGATACTAGAAACTCAGCAAATCGTACGCCACTTGGGTTTTTCTAGAAGATCTAAGTATATTGTCATGGCTGCTTCTTCTACAAACAATGAAAAGCTTTTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGAACCAGGAATCTTGACACTGATGGAGAAATGATTCCTTGTGTACCACATGATCTGATTTGTTTAGCACATGGATTGAATGGTGATCAACAGCAGGATGCCATGCTACTGTGGTTAGAAGAGCATGGTCGCCGATTACAAAAAGGCATTATTAATCTTCGTAAAGAAGGAAATGTTAGAAGCATTAGTCTTTTCCCAGAAGAATCCCCTCTTTGTTCAACAGCTGTAACTAATGGTGTGGAGGTTCGAGCATCTGCGGTGTTTATACCTGAGTTGGCTGATCTTCTAGATCATCGTGAGAAGTACTTATTTTCCTATTCAATCCGCATGTGCCTTCAACCTCAGGGATGCATCATCAACGGAGTGTTCTTCAACTCTTGCCAGCTCCACCAGAGGCACTGGCTTATCCGTGCCAATGATGTCATAGTATCTGATGTTAATGGAGAAGCTGTTATAGGAGAGTTCCCGCTTTTGTATCCTGGTGATAAGGAATTTGTGTACCAGAGTTGCACACCTCTACCGACACGATCAGGTTCCATTGAAGGTTCTTTTACATTTGTCCCTGGCAGCTTGGCTAACCCAGAAGGAAGTCCCTTCGAAGTTATTGTCGCCCGATTCCCTCTCCAGCTGCCAGATTATGTTTTCTGA 4614 0.4434 MPLPTKSIKAAQEGGCTVKDFEDPETPSNNLWVGNLPHDVTESDLMSLFAQYGALDSVTLYSSRNYGFVFFKRVEDAKAAKNELQGTLLRGIHMKIEFARPAKPCKQLWVGGISPVVIKDELEAEFHKFGKIEDFKFIRDRNTAFVEYFNLDDAIHAMKMMNGKPIGGDQIRVDFLRSQSSKKDMLLEYGQFQGKIIGSPDFYAGQKRPLQAQLSVGMKADSRPSNILLIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEAQRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIFLGSKGPKTDMFVTEQTFRPLQMDVFGHNRPMVTNNVLGQIAPGVIVGPNVPLRPFGPHGSFEPLLSGSEFNELGTNQKFQDGSSKSQMGPNWKRPSPPAPGMLHSAPGIRPTTRSTSSAWDVLDINQFQRDSKRSRIDGALPLDDAPFPLRNIDDRALGLEQSYGMEPVIDGGSGPFVNIQGKAHPGPVGTRISTGVPATAQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKCVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPGGTSLQQPLPLSIPSTQYIDRKQVPPSQVEYGQIPAKEEDVLSMDYNRLLHDESKVPSKPLYPATSGASLVQSVPSDYTCSNTAAVTQPGVMLTPELIATLASLLPGTTQSSATDGAKSAVGSSSMKAPFPPLVATDGNQSHVWKQDQQIADPSSHVLQQAGSTYYQPYPLSSAYGHPGQVVPGSSNIQDSAASLQQQVAISSRSMSNFLMPSQSGQATLSLPMNQPYQVDVSSSSQKGYGVVPGIDASVLYSSQAFHNPNISVSSSNQVHGANPSQQQAAVPYSADKVNTETPNQQFQAALQGASQGTSSEVEADKNQSSSNKPKEGAGLEINNENFCLMAVRECMFAGRLRKKRKVNSCWWCHPREGFCIALRRMYLDCTTLVLVLINVLNYCDTQDAVRMQMNEYHLSQSAVLFTLKHSIDQPELGIPHLRQTRAESSQRAFPRGGEMGLESLGDFALHIILTKLGPEDIARVACVSKRFRSSASEDSLWFRACSQDLCLTNPVDLLGNPLPSFKVTYQIWREAFLVYPWSLVKRVKRCWDRIKTWLTNNFPEAEATLCTGASEDEIKELEIALKVKLPLPTRILYRFQNGQEFTSEHLANTTLGSSLGLIGGYSFYNHLVNVYLLPLSQVILETQQIVRHLGFSRRSKYIVMAASSTNNEKLFFLNCTNGQLYVGTRNLDTDGEMIPCVPHDLICLAHGLNGDQQQDAMLLWLEEHGRRLQKGIINLRKEGNVRSISLFPEESPLCSTAVTNGVEVRASAVFIPELADLLDHREKYLFSYSIRMCLQPQGCIINGVFFNSCQLHQRHWLIRANDVIVSDVNGEAVIGEFPLLYPGDKEFVYQSCTPLPTRSGSIEGSFTFVPGSLANPEGSPFEVIVARFPLQLPDYVF 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1308 1537 ProSiteProfiles F-box domain profile. 1094 1140 IPR001810 GO:0005515
Lele11g1308 1537 SUPERFAMILY ApaG-like 1398 1537 IPR036767 -
Lele11g1308 1537 SUPERFAMILY F-box domain 1085 1170 IPR036047 GO:0005515
Lele11g1308 1537 SUPERFAMILY RNA-binding domain, RBD 221 300 IPR035979 GO:0003676
Lele11g1308 1537 CDD RRM3_Spen 228 297 - -
Lele11g1308 1537 CDD RRM3_Spen 108 177 - -
Lele11g1308 1537 Gene3D - 217 307 IPR012677 -
Lele11g1308 1537 Gene3D ApaG domain 1393 1537 IPR036767 -
Lele11g1308 1537 MobiDBLite consensus disorder prediction 907 928 - -
Lele11g1308 1537 MobiDBLite consensus disorder prediction 388 402 - -
Lele11g1308 1537 MobiDBLite consensus disorder prediction 942 973 - -
Lele11g1308 1537 Gene3D - 104 188 IPR012677 -
Lele11g1308 1537 CDD RRM3_Spen 31 100 - -
Lele11g1308 1537 SMART rrm1_1 227 295 IPR000504 GO:0003723
Lele11g1308 1537 SMART rrm1_1 30 97 IPR000504 GO:0003723
Lele11g1308 1537 SMART rrm1_1 107 174 IPR000504 GO:0003723
Lele11g1308 1537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Lele11g1308 1537 MobiDBLite consensus disorder prediction 752 773 - -
Lele11g1308 1537 Pfam F-box domain 1104 1138 IPR001810 GO:0005515
Lele11g1308 1537 MobiDBLite consensus disorder prediction 388 427 - -
Lele11g1308 1537 Gene3D - 16 103 IPR012677 -
Lele11g1308 1537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 299 IPR000504 GO:0003723
Lele11g1308 1537 FunFam Flowering time control protein FPA 21 103 - -
Lele11g1308 1537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Lele11g1308 1537 MobiDBLite consensus disorder prediction 942 972 - -
Lele11g1308 1537 Pfam ApaG domain 1419 1509 IPR007474 -
Lele11g1308 1537 ProSiteProfiles ApaG domain profile. 1396 1537 IPR007474 -
Lele11g1308 1537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Lele11g1308 1537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Lele11g1308 1537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Lele11g1308 1537 Gene3D - 1090 1191 - -
Lele11g1308 1537 PANTHER F-BOX PROTEIN SKIP16 1095 1537 - -
Lele11g1308 1537 SUPERFAMILY RNA-binding domain, RBD 26 181 IPR035979 GO:0003676
Lele11g1308 1537 Pfam SPOC domain 516 631 IPR012921 -
Lele11g1308 1537 SUPERFAMILY SMI1/KNR4-like 1186 1319 IPR037883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1308 Lele-ChrLele11 19886371 19916460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1308 30 287 Eukaryotic Initiation Factors Gene Family AT2G36660 24.555 2.43e-07 53.5