Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1287 ATGCGATTGACTTTGCAGATTCCTTCCCAAACCTTTGGTCGAAACCTCCGCCCATCAGCACCCGGTTAGTCAATGAACCCTCAGTCCCAGAAGGGAATATCTGAAGCTAGTAGAATGCAAGATCTTAAGACCCCTTTGTTGCAGACTCCACAAGATGCCACGCTCAGGGAAGTTAAGTTTAGAATACAAGATATTACTTGTGCGTCCTGTGTAAATTCAATAGAATCTGTAGTTGGAAACCTTGATGGAGTTAATGGTGTTATGGTGTCAGCAATTGATGGCAAAGCTACAGTCAAATATGTGCCAACTCTCATTAGTGTCAAGAAAATAAAAGAAACTGTAGAAGGAGAAGGTTTTAAAGTTCACGAGCTTTCAGAGCAAGACATATCAGTATGTAAGGTCAGGATTAAAGGAATGGCGTGCACAAGCTGCTCTGAATCTGTCGAGCGTTCTCTTCAAATGGTCGATGGTGTGAAAAAAGCATCAGTAGGCCTGGCTTTAGGAGAAGCAAAAGTGCATTTTGATCCTAATCTCACTGATACAAACAAAATAATTGAAGCAATAGAAGATGCTGGCTTTGGGGTAGATCTCATTAGCTCGGGGATTGATGTGAACAAAATGCATTTAAGACTTGAAGGACTTGATTCTCCAGAGGATGCTAATGTAGTAATGTCATCTCTTGAATTAGCTGAAGGTGTAAATCATGTTGAGATGGACTTGACAGGACATAAAGTTACAGTTACCTATGATCCAGATGTTACAGGTCCCAGATCTCTTATACAGTGCATTCGAGCAGCTGCTCGTGGCCCCAATGGATATCATGCAACCTTGTACTCTCCTTCAAGACAAAGAGAAACAGGGAGCATGGATGAAATTAATACGTATAGGGGCCAATTTTTGTTCAGCTGCTTATTTTCAGTTCCCGTGTTCTTATTTGCCATGGTACTTCCCATGCTTCCTCCTTATGGCAACTGGTTGAACTATAAGATCCACAATAGTTTAACTATTGGAATGTTTCTAAGATGTATCCTTAGCACACCTGTTCAGTTCATAGTTGGGAAAAGGTTCTATGTTGGATCATATCATGCACTGAGGCGAAGAACTGCTAACATGGATGTGCTGGTTGCACTTGGCACTAATGCTGCTTCCATGTTAATATCCTTTATTCTCTTGGGAAAATATTTGGAGGTTGTGGCTAAAGGGAAAACGTCAGATGCTTTAGCAAAGTTGACACAACTTGTTCCTGATGAAGTTTGTTTATTAGCCCTGGATGCTGATGGAAATATCATCTCTGAGACAGAAGTCGACACTCAACTTATACAAAGGAATGACATAATTAAAATTATTCCTGGGGCCAAAATTCCTGTCGATGGTATTGTTATCAAAGGGCAAAGTTATGTAAATGAAAGTATGATCACGGGTGAGGCAACGCCTATTGATAAAAGTCCGGGAGACAAGGTTATTGGTGGGACCGTGAATGAGAATGGCTGCTTACTGATTAAGGCCACACATGTTGGAACAGAAACTGCACTTTCTCAAATTGTTCAGCTTGTAGAATCCGCTCAACTCGCTAAAGCACCGATTCAAAAACTTGCTGACCAAATTTCAAAAGTTTTTGTTCCAATAGTGGTTGTCGCAGCATTCATAACCTGGCTGGGATGGTTTATTCCAGGGGAAGCTGGCATTTATCCTAAGTATTGGATACCAAAAGCTATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCAGTTCTAGTTGTTGCCTGCCCATGTGCTCTGGGTCTAGCAACCCCAACAGCAGTCATGGTTGCTTCAGGTATGGGTGCTTCTCAAGGGGTACTCATCAAGGGAGGGGATGCACTGGAAAAGGCACACAAGGTTAAAGTTGTTGTGTTTGATAAGACAGGGACACTTACCATTGGAAAACCAGAGGTAGTTAGTGCTGTGCTATTTTCTGAATTTTTGATGGAGGAATTATGTGACGTGGCTATTGCCGTGGAGGCAAGCAGTGAACACCCCATAGCAAAAGCTGTTGTGGTTTATGCAAAGAGGCTGCGCCAGAAGTTTGGGTCTAGTGCTGAGCAAGTCTTTGATGTGAAGGACTTTGAGGTGCACGGGGGGGCTGGGGTAAGTGGAAAAGTTGGTGGGAGAACAGTTTTAGTTGGGAACAAACGACTAATGCATTCTGGTAGCGTTCCAATACATCACGAGGTTGAAAGGTATGTTTCTGAAAATGAAGTTCTGGCCAGAACCTGTGTGCTAGTTTCAATTGACGGAAAGATTGCTGGAGCTTTCTCTGTAACTGATCCTGTGAAGCCTGGGGCTAAGCGTGTGATATCTTTTCTCCACACAATGAGCATCTTAAGCATCATGGTGACCGGCGATAACTGCGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGACGAGGTCTTTGCTGAGACTGATCCACTGGGAAAAGCAGATAAGGTTAAAAACTTGCAGATGAAAGGCATGGTGGTGGCAATGGTGGGCGATGGAATCAATGACTCACCGGCTTTAGTTGCTGCTGACGTGGGCATGGCAATTGGTGCGGGAACTGACATAGCCCTAGAAGCAGCTGACATAGTCCTGGTCAAAAGCAGCTTGGAAGATGTAATTACAGCCATAGATCTGTCGAGAAAGACAATGGCTCGAATCCGTCTCAACTATATCTGGGCCCTTGGTTACAACATTCTTGGCATGCCAATTGCCGCTGGCATTTTGTTCCCCTTCACCGGAATCAGGTTGCCGCCGTGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTCAGCGTTGTCTCTTCCTCTCTCTTGTTGCAGCTCTACAAGAAACCTTTGCACGTGGCATCCACTTGA 2883 0.4381 MRLTLQIPSQTFGRNLRPSAPGXSMNPQSQKGISEASRMQDLKTPLLQTPQDATLREVKFRIQDITCASCVNSIESVVGNLDGVNGVMVSAIDGKATVKYVPTLISVKKIKETVEGEGFKVHELSEQDISVCKVRIKGMACTSCSESVERSLQMVDGVKKASVGLALGEAKVHFDPNLTDTNKIIEAIEDAGFGVDLISSGIDVNKMHLRLEGLDSPEDANVVMSSLELAEGVNHVEMDLTGHKVTVTYDPDVTGPRSLIQCIRAAARGPNGYHATLYSPSRQRETGSMDEINTYRGQFLFSCLFSVPVFLFAMVLPMLPPYGNWLNYKIHNSLTIGMFLRCILSTPVQFIVGKRFYVGSYHALRRRTANMDVLVALGTNAASMLISFILLGKYLEVVAKGKTSDALAKLTQLVPDEVCLLALDADGNIISETEVDTQLIQRNDIIKIIPGAKIPVDGIVIKGQSYVNESMITGEATPIDKSPGDKVIGGTVNENGCLLIKATHVGTETALSQIVQLVESAQLAKAPIQKLADQISKVFVPIVVVAAFITWLGWFIPGEAGIYPKYWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTIGKPEVVSAVLFSEFLMEELCDVAIAVEASSEHPIAKAVVVYAKRLRQKFGSSAEQVFDVKDFEVHGGAGVSGKVGGRTVLVGNKRLMHSGSVPIHHEVERYVSENEVLARTCVLVSIDGKIAGAFSVTDPVKPGAKRVISFLHTMSILSIMVTGDNCATATAIANEVGIDEVFAETDPLGKADKVKNLQMKGMVVAMVGDGINDSPALVAADVGMAIGAGTDIALEAADIVLVKSSLEDVITAIDLSRKTMARIRLNYIWALGYNILGMPIAAGILFPFTGIRLPPWLAGACMAASSLSVVSSSLLLQLYKKPLHVAST 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1287 960 CDD HMA 209 276 IPR006121 GO:0046872
Lele11g1287 960 SUPERFAMILY HMA, heavy metal-associated domain 52 126 IPR036163 GO:0046872
Lele11g1287 960 Gene3D - 203 279 - -
Lele11g1287 960 Pfam haloacid dehalogenase-like hydrolase 628 853 - -
Lele11g1287 960 SFLD p-type atpase 614 891 IPR044492 -
Lele11g1287 960 PRINTS Copper-transporting ATPase 1 signature 57 82 - -
Lele11g1287 960 PRINTS Copper-transporting ATPase 1 signature 83 106 - -
Lele11g1287 960 PRINTS Copper-transporting ATPase 1 signature 154 175 - -
Lele11g1287 960 FunFam Copper-transporting ATPase 1, putative 400 522 - -
Lele11g1287 960 Gene3D - 643 772 IPR023299 GO:0000166
Lele11g1287 960 Gene3D - 51 127 - -
Lele11g1287 960 Gene3D - 130 201 - -
Lele11g1287 960 SFLD Haloacid Dehalogenase 614 891 - -
Lele11g1287 960 PRINTS P-type cation-transporting ATPase superfamily signature 839 858 - -
Lele11g1287 960 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Lele11g1287 960 PRINTS P-type cation-transporting ATPase superfamily signature 862 874 - -
Lele11g1287 960 PRINTS P-type cation-transporting ATPase superfamily signature 764 775 - -
Lele11g1287 960 PRINTS P-type cation-transporting ATPase superfamily signature 786 796 - -
Lele11g1287 960 PRINTS P-type cation-transporting ATPase superfamily signature 632 646 - -
Lele11g1287 960 FunFam ATPase copper transporting beta 53 126 - -
Lele11g1287 960 CDD HMA 59 122 IPR006121 GO:0046872
Lele11g1287 960 MobiDBLite consensus disorder prediction 11 39 - -
Lele11g1287 960 Pfam Heavy-metal-associated domain 60 120 IPR006121 GO:0046872
Lele11g1287 960 Pfam Heavy-metal-associated domain 134 193 IPR006121 GO:0046872
Lele11g1287 960 Pfam Heavy-metal-associated domain 210 266 IPR006121 GO:0046872
Lele11g1287 960 SUPERFAMILY HAD-like 630 945 IPR036412 -
Lele11g1287 960 SUPERFAMILY Calcium ATPase, transduction domain A 433 518 IPR008250 -
Lele11g1287 960 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 896 IPR023298 -
Lele11g1287 960 ProSiteProfiles Heavy-metal-associated domain profile. 206 272 IPR006121 GO:0046872
Lele11g1287 960 FunFam Copper-transporting ATPase HMA5 129 200 - -
Lele11g1287 960 SUPERFAMILY HMA, heavy metal-associated domain 204 279 IPR036163 GO:0046872
Lele11g1287 960 ProSitePatterns Heavy-metal-associated domain. 136 165 IPR017969 GO:0046872
Lele11g1287 960 Gene3D - 623 889 IPR023214 -
Lele11g1287 960 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 382 955 - -
Lele11g1287 960 SUPERFAMILY HMA, heavy metal-associated domain 127 199 IPR036163 GO:0046872
Lele11g1287 960 Gene3D - 400 522 - -
Lele11g1287 960 ProSitePatterns E1-E2 ATPases phosphorylation site. 634 640 IPR018303 -
Lele11g1287 960 TIGRFAM TIGR00003: copper ion binding protein 134 195 IPR006122 GO:0005507
Lele11g1287 960 TIGRFAM TIGR00003: copper ion binding protein 58 121 IPR006122 GO:0005507
Lele11g1287 960 ProSiteProfiles Heavy-metal-associated domain profile. 131 197 IPR006121 GO:0046872
Lele11g1287 960 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 385 917 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele11g1287 960 Pfam E1-E2 ATPase 431 610 - -
Lele11g1287 960 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 378 948 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele11g1287 960 CDD P-type_ATPase_Cu-like 299 935 - -
Lele11g1287 960 FunFam Probable copper-transporting ATPase HMA5 758 896 - -
Lele11g1287 960 ProSiteProfiles Heavy-metal-associated domain profile. 57 123 IPR006121 GO:0046872
Lele11g1287 960 CDD HMA 133 195 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1287 Lele-ChrLele11 19713785 19719537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1287 60 954 Primary Pumps ATPases AT1G63440 55.340 0.0 1020