Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1274 ATGTCATCCCCTACGCCGTCTTACTGGTGTTACAGATGCACCCGGTTTGTTGTCCTCTCCAATGCTCCCAACCGCATTGCTTGTCCCCACTGCCGAACTGGCTTCCTCGAAGAAATCCTCTCCAATCCATTATCCGACCGTCGTCTCACCCCGTCTCCATCTTCCACCTTGTCCGTCTTCGCCCTTGAACCTCCAAGTTCCCTCCATTTAAGGAGACAAGGGTTCCGGAGGAGACGCCGTAATGCCGGCAGCCGTTCTTCCTTTAACCCGTTGATTGTTCTCCGCGGACCCGCCCATGGTGGTGTTGGACAAGACGGTGGAGATAATGAAAGAAGTAGTAGCAGCTTCCAATTGTACTATGATGAAGGTGATGGCTCCGGTCTCCATCCGTTACCGCCGAATATGTCGGATTTCTTGCTTAGGTCAGGCTTCGATCATTTGTTGGAGCAGTTTTTGCGGACAGAAAATAATGGCCTCGAGCGGCTGGAGAACCTGCCGGCGTCCAAAATAGCCATCGGATCAATGCCGACGATTGAGATAGGGGAGGACCATGTGAGTACGGATTCACACTGTGCCATTTGTAAAGAAGCGTTTGAGCTAGGTTCAGAGGCACGCGAAATGCCTTGCAAGCATATTTACCATTCGGATTGCATTGTTCCATGGCTATCAACGCGCAATTCATGTCCTGTGTGTCGCAACGAGTTGCCTTCGGATGGAAACCATCTGGAAGGTAGAGTTTCAAGGCAAACCGATCAAGAAACGGTCGGATTAACGATATGGAGACTACCAGGAGGAGGCTTCGCCGTTGGAAGGTTTCCCTACGATCACGGTGATGGCGACAGTCATTGGCCAGTTGTATACACAGAAATGGATGATGCGCTCGGCGCACTGGGCGTTCCCAGAAGAGTTTCCCGAGCACTGAGAAGTATCAGACTTAGCGAAAGCCGGGGATTGAGCAGGATGTTTCGCAACTTCTGGGCATTCTTCGGGAGGCTTGGATCTAGGTCGTCAACTTCCATTTCTCAGAATGGGCTCATGAATAGAAGCCTCAGGCAAATGAGTTCTGTTTTCAGTAGGAACTCGCAGAGCAGAAGAAGAAATAGGGCAGTGGAAGATTAA 1119 0.5094 MSSPTPSYWCYRCTRFVVLSNAPNRIACPHCRTGFLEEILSNPLSDRRLTPSPSSTLSVFALEPPSSLHLRRQGFRRRRRNAGSRSSFNPLIVLRGPAHGGVGQDGGDNERSSSSFQLYYDEGDGSGLHPLPPNMSDFLLRSGFDHLLEQFLRTENNGLERLENLPASKIAIGSMPTIEIGEDHVSTDSHCAICKEAFELGSEAREMPCKHIYHSDCIVPWLSTRNSCPVCRNELPSDGNHLEGRVSRQTDQETVGLTIWRLPGGGFAVGRFPYDHGDGDSHWPVVYTEMDDALGALGVPRRVSRALRSIRLSESRGLSRMFRNFWAFFGRLGSRSSTSISQNGLMNRSLRQMSSVFSRNSQSRRRNRAVED 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1274 372 CDD RING-H2_RNF126_like 191 232 - -
Lele11g1274 372 Pfam Ring finger domain 190 232 IPR001841 -
Lele11g1274 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 236 - -
Lele11g1274 372 MobiDBLite consensus disorder prediction 91 116 - -
Lele11g1274 372 Pfam Protein of unknown function (DUF1117) 255 361 IPR010543 -
Lele11g1274 372 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lele11g1274 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Lele11g1274 372 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Lele11g1274 372 SUPERFAMILY RING/U-box 171 238 - -
Lele11g1274 372 SMART ring_2 191 231 IPR001841 -
Lele11g1274 372 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1274 Lele-ChrLele11 19630829 19631947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1274 130 243 C3H Transcription Factor Family AT5G01980 47.368 2.21e-28 114