Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1265 ATGGCGTTATCCAAAACGGCAGGACCCGTTCCAGTGGCCCACAACGCTTCTCAACCGGCGAAGCTACGGTGGGGCGAGCTTGATGAGGACGATGGGGAGGATCTAGACTTTCTGCTGCCGCCGCGACAGGTTATAGGTCCTGATGAGAACGGGATAAAGAAGGTCATTGAGTACAAATTCAATGAAGATGGCAATAAGGTCAAGATTACAACCACCACCCGGACTCGAAAGCTTGCTAATGCTCGCCTCAGTAAGCGAGCCGTCGAGAGGCGATCCTGGGCTAAGTTTGGCGATGCTGTTCACGAGGATGTTGGTAGCAGGCTGACCATGGTATCCACCGAAGAGATCCTCCTCGAACGACCTAGGGCCCCTGGTAGCAAACCAGAAGAACCAAAGGTTGCTGGAGACCCGTTGGCACAATTCCAGAAAGGCGCTGTTCTCATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCTTACAAAGATCTTGCCCAACCAGTTGAGGGATTTATTGATAAGCCTGCAGCTTCTGAAGCTGCAACTGCTGCTTCTGGTCCAGCTAAGGGAGCATATGTTCCTCCTGGCATGAGAGCAGGTGCGGAAAGGACTGGTGGATCAGACATGCGCCGTAGGAATGATGAAAATTCTGTACGTGTCACCAATCTCTCAGAAGACACGAGAGAGCCCGATTTACTCGAGCTGTTCCGTCCTTTTGGTGCTGTAAGCAGAGTCTATGTTGCTATCGATCAGAAGACTGGCATGAGCAGGGGATTTGGCTTTGTTAACTTTGTAAACAGGGAAGATGCACAGAGAGCTATTAACAAGCTCAATGGATATGGGTATGACAATCTCATCCTTAGAGTCGAATGGGCCACCCCGAGGACAAACTAA 909 0.5083 MALSKTAGPVPVAHNASQPAKLRWGELDEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTTTRTRKLANARLSKRAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPVEGFIDKPAASEAATAASGPAKGAYVPPGMRAGAERTGGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1265 302 CDD RRM_eIF3G_like 222 297 IPR034240 -
Lele11g1265 302 MobiDBLite consensus disorder prediction 1 23 - -
Lele11g1265 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 289 IPR000504 GO:0003723
Lele11g1265 302 Gene3D - 181 302 IPR012677 -
Lele11g1265 302 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 21 301 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lele11g1265 302 MobiDBLite consensus disorder prediction 188 220 - -
Lele11g1265 302 PIRSF Transl_init_eIF-3_RNA-bind 13 302 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lele11g1265 302 Pfam Eukaryotic translation initiation factor 3 subunit G 43 169 IPR024675 -
Lele11g1265 302 SUPERFAMILY RNA-binding domain, RBD 210 301 IPR035979 GO:0003676
Lele11g1265 302 FunFam Eukaryotic translation initiation factor 3 subunit G 185 302 - -
Lele11g1265 302 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 28 298 - -
Lele11g1265 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Lele11g1265 302 CDD eIF3G 50 168 IPR024675 -
Lele11g1265 302 SMART rrm1_1 222 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1265 Lele-ChrLele11 19588910 19591394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1265 20 300 Eukaryotic Initiation Factors Gene Family AT3G11400 71.154 9.77e-157 439