Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1261 ATGACTAGCAAATTTCTTCCTAAAGGAGCTCAACTCGTCGCTGGTCTGGAGAGCACCACGCTGTCTGTACGATCAAAGGGGGTGGGAGAAAAGGCGGCGCTGAATGTAGATAAAGATGCTAGGGAGAATTTGCATGGGTTAAAGGGCGGAAAGAATCATGACCGTGATGGCAGTGTTGATGAAGAAGAAGGGAGAAGCAGCAAGCAGTCAGCAGTCTTGCCCCATGGATCAACGAAAGACTTACAGACAAGTGAGCAGGCTGTGGAATCATCTGATGGAGGGAAGACGCGCTTTAAGAAACAAGGCAGGAAGAAGGAAACTGTGGATCTGAGGACACTTTTGGTTTTATGTGCACAAGCTGTGTCTGCCAATGATTGGTGGACTGCTCGTGAATTACTAAAGCAGATCAGGCAACATTCTTCACCCTTGGGGGATGCATCTCAGAGGGTGGCTCATTATTTCGCCAATGGCCTTGAGGCACGTTTGGTAGGTGGTGGTGGTGGTGGTGCTGGAACCCAGCTATTTTGTACTTCTCTGAGCTCCAAGAGGATCTCTGCTGCTGAAATTCTGAAAGCTTACCAAGTTTCAATATCTGCCTCGCCTTTTAAGAAGGAGGCCCTGCTCCATTTCCCTGCACTGTATGATATGTTTGATACTTTGGTACCCCAGGAAAACCAATGGAGGTTCATGCTTGAGAGAGAAATTTTTGGTCGGGAGGCGATGAACGTTGTGTCATGTGAAGGATTAGAAAGGGTTGAGAGGCCTGGGACATACAAACAATGGCAGGCAAGGGTTGCAAGGGCAGGGCTGGAAGGGACACATTTTGTATGCTTCCCCTCGTTGGATTCCAGCATAGTGCGGTGTGGCCTTAGTCTGAACTTGTGTCACAACTCACGTAATGAACTATCAGGTCATGGTAAATATCCAGTTCACTTGACCTTGAGACGGGATGAATTTTCAATATAA 966 0.4772 MTSKFLPKGAQLVAGLESTTLSVRSKGVGEKAALNVDKDARENLHGLKGGKNHDRDGSVDEEEGRSSKQSAVLPHGSTKDLQTSEQAVESSDGGKTRFKKQGRKKETVDLRTLLVLCAQAVSANDWWTARELLKQIRQHSSPLGDASQRVAHYFANGLEARLVGGGGGGAGTQLFCTSLSSKRISAAEILKAYQVSISASPFKKEALLHFPALYDMFDTLVPQENQWRFMLEREIFGREAMNVVSCEGLERVERPGTYKQWQARVARAGLEGTHFVCFPSLDSSIVRCGLSLNLCHNSRNELSGHGKYPVHLTLRRDEFSI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1261 321 MobiDBLite consensus disorder prediction 70 91 - -
Lele11g1261 321 ProSiteProfiles GRAS family profile. 101 321 IPR005202 -
Lele11g1261 321 MobiDBLite consensus disorder prediction 34 102 - -
Lele11g1261 321 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 204 IPR005202 -
Lele11g1261 321 MobiDBLite consensus disorder prediction 34 68 - -
Lele11g1261 321 Pfam GRAS domain family 110 203 IPR005202 -
Lele11g1261 321 Pfam GRAS domain family 205 274 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1261 Lele-ChrLele11 19557450 19560432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1261 204 270 GRAS Transcription Factor Family AT1G07530 58.209 1.18e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele11g1261 GRAS 2.4e-13 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1442 31 19913176 19914368 Lele11g1261 11 19557450 19560432 CCT
Lele09g1258 09 21375989 21380561 Lele11g1261 11 19557450 19560432 hybridization
Lele10g1233 10 23396357 23398702 Lele11g1261 11 19557450 19560432 hybridization