Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1257 ATGGGAGTATACGTTTCCGGTATTCCCCATTATGCCCTCGCCAGTTTCTCGTCTTGGAGGGTACACGAGGGAAGAAAAGCAGAGGATGCCACACTGCAAGCACTCACTGTTAAGAGCGTAACAGAAACGCTCCACGGAATTGAATGCACATGGAAGTACTCCACCCTCTCCTTCCCACAAGCCACAGATAGCCAGTCGTCTCTCATCCCTAAATCTCTCTCTCTTTCCCGCTTCACTTACGTTTACATGGGTATGGCTTCTCTGGTCTTCGTTGCATTTCTTATCTCCTTCGCCTTCACGGTCGAGGCTAAAATCCCAGGGGTTTACTCCGGCGGCCCTTGGCAGAGTGCTCATGCCACCTTCTACGGAGGAGCCGATGCTTCCGGCACTATGGGTGGAGCTTGTGGATACGGTAACCTCTACAGTCAGGGGTACGGCGTGAATACGGCGGCGCTTAGCACAGCACTGTTCAACAATGGGCTGAGCTGCGGAGCGTGCTTTGAGATAAAGTGCGCAAATGACAAACAATGGTGTCACTTGGGAAGCCCGTCCATCTTCATCACGGCCACTAACTTCTGCCCGCCCAACTTCGCTCTTCCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCCCACTTTGACCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCCGGCATCGTCCCCGTCGCCTACCGTCGGATTCCATGCAGGAAGCAGGGAGGAATAAGGTTCACCATCAACGGCTTCCGTTACTTCAATCTGGTGCTAATCAGCAACGTGGCGGGCGCAGGGGATATAGTGAGGGCATACGTGAAGGGATCGAGGACGGAGTGGGTGCCGCTGAGCCGAAACTGGGGCCAAAACTGGCAGTCAAACTCAGTATTGGTGGGACAGGCATTGTCGTTTAGGGTCACGGGCAGTGACCGTCGCACTTCCACCTCCTGGAACATCGTCCCTTCCAACTGGCAATTCGGTCAAACCTTCACTGGCAAGAACTTCCGGATCTAA 1023 0.5474 MGVYVSGIPHYALASFSSWRVHEGRKAEDATLQALTVKSVTETLHGIECTWKYSTLSFPQATDSQSSLIPKSLSLSRFTYVYMGMASLVFVAFLISFAFTVEAKIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKQWCHLGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRIPCRKQGGIRFTINGFRYFNLVLISNVAGAGDIVRAYVKGSRTEWVPLSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1257 340 Gene3D - 101 242 IPR036908 -
Lele11g1257 340 PRINTS Expansin signature 292 313 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 245 257 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 171 182 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 185 195 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 257 278 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 221 234 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 321 337 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 204 221 IPR002963 GO:0009664
Lele11g1257 340 PRINTS Expansin signature 144 158 IPR002963 GO:0009664
Lele11g1257 340 Gene3D - 246 338 IPR036749 -
Lele11g1257 340 PRINTS Expansin/Lol pI family signature 131 149 IPR007118 GO:0005576
Lele11g1257 340 PRINTS Expansin/Lol pI family signature 113 128 IPR007118 GO:0005576
Lele11g1257 340 PRINTS Expansin/Lol pI family signature 283 297 IPR007118 GO:0005576
Lele11g1257 340 PRINTS Expansin/Lol pI family signature 321 335 IPR007118 GO:0005576
Lele11g1257 340 PRINTS Expansin/Lol pI family signature 153 171 IPR007118 GO:0005576
Lele11g1257 340 PRINTS Expansin/Lol pI family signature 229 245 IPR007118 GO:0005576
Lele11g1257 340 PANTHER EXPANSIN-A15 93 338 IPR002963 GO:0009664
Lele11g1257 340 SUPERFAMILY PHL pollen allergen 243 335 IPR036749 -
Lele11g1257 340 Pfam Lytic transglycolase 149 236 IPR009009 -
Lele11g1257 340 FunFam Expansin 246 338 - -
Lele11g1257 340 Pfam Expansin C-terminal domain 247 324 IPR007117 -
Lele11g1257 340 SUPERFAMILY Barwin-like endoglucanases 113 264 IPR036908 -
Lele11g1257 340 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 132 246 IPR007112 -
Lele11g1257 340 FunFam Expansin 103 242 - -
Lele11g1257 340 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 256 335 IPR007117 -
Lele11g1257 340 SMART dpbb_1 149 236 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1257 Lele-ChrLele11 19535543 19537278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1257 87 340 Expansin Gene Family AT2G39700 83.071 3.03e-162 451