Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1255 ATGCTTTACTCCCTCCCTCCCTCCCTCAATTCCTTGACCCATTCCCTTCCCTTCCCAATGAAGTGCTTCCATTTCTCAAACGGGGGACCTGATCCCCGAGTAGACAATCATCACTCTGTTACCTCCAAGGCTTCCAAGCTCTACTGGGCTCGCTCGCTCAGCGTCGCTTCTTCTACCTTGGGCTCAAGGAGGTCTGAATTTGATTCTGATTCAAAGGACTTCTCCGATGCAGTTGAGTTCCATAAATTCTTGTCTCGGCGGCGAGCTAATGATTTGCGCGTTTTTTCCTTCTCTGAGCTTAAATTGGCAACTCGTGGATTCAGTAGAGCCCTTTTGATTGGAGAGGGAGGGTTTGGTTGTGTCTACAAAGGGGTTGTCAGGGCGCCCAACGAGCGTGCAAATGACGGTTCTCTTTCCAATATGGATGTTGCGATCAAGCAATTGAACCGTAATGGACCCCAGGCATGCTCCGGGCACAGGGAATGGATCAATGAAGTAAACTTGTTGGGTGTAATCAAGCATCCAAATCTTGTGAAGCTAGTGGGATATTGCGCCGAAGATGATGAGAGGGGAATTCAGTGGCTTCTAGTCTATGAGCTTATGCAGAATAAGAGCTTGGAAGATCATCTTTTGGGACGAGTGCCATCAGCACTCACATGGATAGCAAGATTAAGAATTGCTCAAGATGCTGCCCGTGGATTGGCGTATCTGCATGAAGAAATGGATTTTCAGCTTATTTTTCGGGATTTTAAGACATCCAATGTCCTGCTGGATGAGGACTTCAATGCAAAGCTTTCTGATTTCGGACTTGCTAGGCAAGGACCCTCAGAAGGATTTGGCCATGTTTCAACATCTGTTGTGGGGACTATTGGTTATGCTGCACCAGAGTATGTTCGTTCTGGTAAGTTAACTGCTAAGAGTGATGTTTGGAGCTTTGGTGTAGTTCTTTATGAACTCATTACTGGGAGGCGAGCTGTTGAGAGAAACCTACCGAGAAATGAACAAAAGCTTTTGGAATGGGTAAGAAATTATGTTTCTGACCCCAGAAAGTTCCATCTTCTGGTAGACCCACGACTTGAAGGACAATATTGCATCAAATCAGCTCAAAAACTTGCAACCCTAGCAAACAAGTGCCTTACAAAACACCCGAAATACCGTCCTAAAATGAGTGAAGTGGTTGAGACGCTTGGAAGCATAATTAAAGAGACAATTTCTCAGTTTGAATGCACTCTTCAAGCTGTTGCAAGTGAAGAAGAAAAAGAAGAGAAGTTGTCTGAAGAGGACACTGAATCTGGGGCTGCTAAACAAGGGAATAATTATCTGAAGAAGGTCTTGCACTTCAGAGAAATGATGAGTTTAAGAAACAAGTCCATTAGAAGGTTGGATTGGAAAAATTGGGGTTTGCTGCGAACTTGGTGA 1419 0.4482 MLYSLPPSLNSLTHSLPFPMKCFHFSNGGPDPRVDNHHSVTSKASKLYWARSLSVASSTLGSRRSEFDSDSKDFSDAVEFHKFLSRRRANDLRVFSFSELKLATRGFSRALLIGEGGFGCVYKGVVRAPNERANDGSLSNMDVAIKQLNRNGPQACSGHREWINEVNLLGVIKHPNLVKLVGYCAEDDERGIQWLLVYELMQNKSLEDHLLGRVPSALTWIARLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNVLLDEDFNAKLSDFGLARQGPSEGFGHVSTSVVGTIGYAAPEYVRSGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRNYVSDPRKFHLLVDPRLEGQYCIKSAQKLATLANKCLTKHPKYRPKMSEVVETLGSIIKETISQFECTLQAVASEEEKEEKLSEEDTESGAAKQGNNYLKKVLHFREMMSLRNKSIRRLDWKNWGLLRTW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1255 472 Gene3D Phosphorylase Kinase; domain 1 85 200 - -
Lele11g1255 472 Gene3D Transferase(Phosphotransferase) domain 1 201 422 - -
Lele11g1255 472 PANTHER OS01G0588500 PROTEIN-RELATED 69 398 - -
Lele11g1255 472 SUPERFAMILY Protein kinase-like (PK-like) 89 396 IPR011009 -
Lele11g1255 472 CDD STKc_IRAK 113 399 - -
Lele11g1255 472 ProSiteProfiles Protein kinase domain profile. 107 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1255 472 ProSitePatterns Protein kinases ATP-binding region signature. 113 146 IPR017441 GO:0005524
Lele11g1255 472 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 201 409 - -
Lele11g1255 472 Pfam Protein tyrosine and serine/threonine kinase 113 396 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1255 Lele-ChrLele11 19524662 19527053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1255 93 397 Glycoside Hydrolase AT3G07070 49.511 1.70e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele11g1255 PK_Tyr_Ser-Thr 5e-46 CL0016