Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1237 ATGAAGAGAGCAAGAGATGAGAGTGAACCAGAAGGCTTAAACATGGATAAGTGTTTGATGTTACTGTCTCGAGTTGGGGTGACGAGCCCTTCATCACAGGGTAGTGAGGGTGGTTTTAAGTGCAAGACTTGTAACAGAGTGTTCCCTTCTTTTCAAGCTCTTGGAGGGCACAGAGCCAGGCGCAAGAAGCCCAAGCTCATGCTTCCTTTGAAGCTCAACAAGATGCATCCATGTCCCATTTGCGGAGTCCAGTTTGGAATCGGACAAGCCCTCGGAGGTCACATGAGAAAGCATAGAGCTCCTGTTCATAAGAATAATAAGTTTGATTTATGCCTGGACTTGAACTTGACGCCTCTCGAAAATGATCATCTCAACCTCAACTTGACCACACCCATCGTTAATTTTCTTGTTGGATCCTAA 420 0.4571 MKRARDESEPEGLNMDKCLMLLSRVGVTSPSSQGSEGGFKCKTCNRVFPSFQALGGHRARRKKPKLMLPLKLNKMHPCPICGVQFGIGQALGGHMRKHRAPVHKNNKFDLCLDLNLTPLENDHLNLNLTTPIVNFLVGS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1237 139 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lele11g1237 139 Gene3D Classic Zinc Finger 25 106 - -
Lele11g1237 139 PANTHER ZINC FINGER PROTEIN ZAT5 9 123 - -
Lele11g1237 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 108 IPR013087 -
Lele11g1237 139 SUPERFAMILY beta-beta-alpha zinc fingers 39 98 IPR036236 -
Lele11g1237 139 SMART c2h2final6 76 98 IPR013087 -
Lele11g1237 139 SMART c2h2final6 39 59 IPR013087 -
Lele11g1237 139 Pfam C2H2-type zinc finger 39 60 - -
Lele11g1237 139 Pfam C2H2-type zinc finger 76 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1237 Lele-ChrLele11 19420257 19420676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1237 1 122 C2H2 Transcription Factor Family AT3G53600 46.795 1.41e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g1237 zf-C2H2_6 2e-09 CL0361