Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1233 ATGCCGATTTCCAGAATTGCCATCGGAGATGCGTCTGAGTTTAGTCAGGCCGATGCTCTTAAGGCGGCCTTGGCTGAGTTCATCTCCATGCTCATCTTTGTCTTTGCCGGCGAAGGCTCCGGCATGGCTTTCAATAAGCTCACAAACAATGGTTCAGCAACACCAGCAGGGCTAGTGTCAGCATCAATAGCTCATGCCTTTGCCCTGTTTGTGGCGGTCTCCGTCGGCGCCAACATTTCCGGTGGTCACGTGAATCCCGCTGTTACCTTCGGAGCTTTCGTCGGTGGCCACATTACCCTCCTTAGAAGCATTTTGTACTGGATTGCCCAGTTGCTAGGCTCCGTGGTTGCTTGTTTGCTCCTTAAATTTGCCACCGGTGGACTGGAAACTTCGGCATTCGCTTTGTCTGCAGGGGTGGGAGCATGGAACGCAGTCGTATTTGAGATAGTGATGACTTTCGGTTTGGTCTACACAGTGTATGCAACGGCCGTGGACCCAAAGAAGGGAGACATCGGCATAATAGCCCCTATTGCTATTGGTTTCATAGTGGGTGCCAACATTCTGGCCGGTGGTGCCTTCGATGGTGCGTCCATGAACCCGGCCGTGTCCTTTGGACCGGCCGTGGTCAGCTGGACATGGGCTAACCACTGGGTCTATTGGCTCGGTCCGTTTGTCGGAGCCGGTATTGCAGCTCTTGTCTATGAGCTTTTCTTCATCAACCAGAACGCTCATGAACAACTTCCGACCACTGACTATTAG 759 0.5283 MPISRIAIGDASEFSQADALKAALAEFISMLIFVFAGEGSGMAFNKLTNNGSATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWLGPFVGAGIAALVYELFFINQNAHEQLPTTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1233 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 SUPERFAMILY Aquaporin-like 17 241 IPR023271 -
Lele11g1233 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Lele11g1233 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Lele11g1233 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1233 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lele11g1233 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1233 Lele-ChrLele11 19401633 19403106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1233 1 252 Major Intrinsic Protein MIP AT4G01470 78.968 8.70e-145 403