Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1230 ATGCATATAAAGCGCTCTTTCCCCTTCCGGAAAACCCTAGAGTTGGCAAGTCCCCCTGCTTCTCAAGCGCAGGTATCTTCCCTGTCATTTATTGTTGGTGCCTTTGTCTTACGGAACTTCAGCAGGTTAATGTTTTTTATCTATTTTGCCTTCAGGGTTTCAGGAAGATTTGACGAGCCAAGTTTCTTTTTTGCTTATCCATGGCGCCTAAAGGGCGTACTTTCTGATGTCAGTGATAGTTCAAAGAAGACTGACCCAAAGGCACAGGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGCCCCACTTTCAAGAAGAAGGCCAAGAAAATTAGAACATCAGTCACATTCCATCGACCCAAGACATTGAAAAAGGATAGAAACCCCAAGTACCCTCGTATCAGTGCTCCAGGAAGAAATAAGCTTGATCATTATCAAATTCTGAAGTATCCTCTCACCACCGAGTCAGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTACGTGCAGACAAGAAGAAGATAAAGGATGCTGTGAAGAAAATGTACGACATTCAGGCCAAGAAAGTAAACACTTTGATAAGGCCCGACGGTACCAAGAAGGCCTATGTCAGGTTGACTCCCGATTATGATGCCTTGGATGTCGCCAACAAGATTGGAATCATCTAA 681 0.4317 MHIKRSFPFRKTLELASPPASQAQVSSLSFIVGAFVLRNFSRLMFFIYFAFRVSGRFDEPSFFFAYPWRLKGVLSDVSDSSKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPGRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1230 226 Gene3D - 107 226 IPR012677 -
Lele11g1230 226 Pfam Ribosomal protein L23 146 208 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele11g1230 226 Hamap 50S ribosomal protein L23 [rplW]. 146 226 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele11g1230 226 ProSitePatterns Ribosomal protein L23 signature. 204 219 IPR001014 GO:0019843
Lele11g1230 226 FunFam 60S ribosomal protein L23a 105 226 - -
Lele11g1230 226 Pfam Ribosomal protein L23, N-terminal domain 87 136 IPR005633 -
Lele11g1230 226 PANTHER 60S RIBOSOMAL PROTEIN L23A 79 226 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele11g1230 226 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 143 219 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lele11g1230 226 TIGRFAM uL23_arch: ribosomal protein uL23 150 226 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1230 Lele-ChrLele11 19390479 19392384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1230 99 226 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.844 3.82e-65 197