Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1220 ATGTCGCCGCCGGACGCAGGCTCATTTCCCGGAAAGGGTTTTCAGTGCCAAACGGAGTCGGAGGTGAGCCACAGCAGTTGCAGCAGCTGGTGTAGCGGCCATGAATCGCCGACTTCTCTGATGAGTTACCAATGCATGTTTCAGAGGAGTACAAGCAGCCATTCTCTGCAGAGGAGTGGGCCCCACCACCCAGTTTCGGCTTCATTCGCCGACTTGCTGGAGGAGGCCCCGGTGAGAAAAGTTTACAGTGCCGGTGATTTGCAGAACAATGTGCGGTCACTCTCAGGAAGTCTACTGAGGAGCGAAAGTAGTATGATCATCGAAGGAATGAGCAGAGCGTACCCTTATAGCCCGGAGGAGAAGAGGGTGAGGATTGAGAGATACAGAATCAAGAGACATAAGAGGAACTTCAACAAGAAAATTAAGTATGAATGCAGGAAGACGTTGGCGGACAACAGGCCGCGCATCAGAGGAAGATTTGCAAAGAGTGAAGAAACTGAGAAGAAGAGTCATATGAGTGAGAATGAGAGTGGAGAAGAGGAAGAAGATGAGAATTGGGCCAGTTTTTTTGAAAACTTGGTAGTTGCAAATCTTGTTCACGAACCATGA 609 0.4943 MSPPDAGSFPGKGFQCQTESEVSHSSCSSWCSGHESPTSLMSYQCMFQRSTSSHSLQRSGPHHPVSASFADLLEEAPVRKVYSAGDLQNNVRSLSGSLLRSESSMIIEGMSRAYPYSPEEKRVRIERYRIKRHKRNFNKKIKYECRKTLADNRPRIRGRFAKSEETEKKSHMSENESGEEEEDENWASFFENLVVANLVHEP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1220 202 MobiDBLite consensus disorder prediction 154 176 - -
Lele11g1220 202 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Lele11g1220 202 MobiDBLite consensus disorder prediction 154 186 - -
Lele11g1220 202 Pfam CCT motif 123 163 IPR010402 GO:0005515
Lele11g1220 202 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 183 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1220 Lele-ChrLele11 19309342 19310226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1220 109 172 C2C2-CO-like Transcription Factor Family AT5G24930 45.312 4.61e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele11g1220 CCT 3.1e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1220 11 19309342 19310226 Lele29g0181 29 1018552 1022318 CCT
Lele11g1220 11 19309342 19310226 Lele30g1226 30 14990167 14993869 CCT
Lele11g1220 11 19309342 19310226 Lele31g1372 31 19554612 19558379 CCT
Lele11g1220 11 19309342 19310226 Lele32g0170 32 983394 988508 CCT
Lele09g1221 09 21109967 21110921 Lele11g1220 11 19309342 19310226 hybridization
Lele10g1196 10 23128797 23129281 Lele11g1220 11 19309342 19310226 hybridization