LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g1212	ATGTTCGATCTTAATTTGAATGCCGATTCGACTGATACCTCTCATAAAGATGAGTCCATAAGGTTCTCCGACGAGCTAACGGAAGCCTCCTGGAATCAAATGGCAAAATCGGGGACTTCCAATTCCTCTAATGTCTATGCTGACGGATCCAACAATGGAGGATATGAGGACTCCTGCTCTACACGCGGTGGGGACGCCTTTACCTTTAATTTCGATATCCTTAAGGAGGAAGGCGGGAAAAAAGTCGCAAACAGGGAGCTATTTCTGTTTAGTGAAACTAAAGGAGTGGACGGCGAGTCTGCAAATTGGCAAGGTCAGGCTTTGTGTGCCCTTCCATCGAGAAAGAACTGGATGAGTCTTTCCTTTGATCATCAGGGTGGTAACGGAGAGATGAAGATGGTCCAGGTTCAGCAACAACCTCAACAGCAAGTGAAGAAAAGCAGAAGGGGTCCAAGGTCTCGGAGCTCGCAGTTCCGAGGGGTAACCTTTTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTCTATTTGGGTGGGTTTGATACAGCTCATGCCGCTGCCAGGGCCTACGATCGTGCTGCTATTAAGTTTAGGGGAGTCGATGCTGACATCAATTTCAATCTTAATGATTACGAGGAGGATCTTAAGCAGGTATATATATCTTGGGCTATTCGACAGCGAAGTGACAGTCACAATCTTGACCTCAATTTGGGCATAGCAACACCAGGCAGTGGTCCAGAAGAAAATAGGGGCCATCAGTTACAACCTATTCCTTACAACATGCATACTGGAAGAAGTTCAAGGTTTTTCTCTTTGGGAAGTCTTATTTCTTTCATTGAGGTCCTAATAAGGATGGGTTCTCTTAATCTGCAGAAGGAGATCAATGTTGATCCATCGTTGAATAGGCCAGTTGTTACTGAGGAGCGTCCTTTTGTATGGAATGGCATCTATCCTAGTTTCTTTCCTAATGAGGTGAATTTCATTGTCCGGCATATAGATTTTCAATCAGAGTATTATTCTTGTATCTCAGAAAGGGTTGAGAGAATCAGTAGAGATCATTCACTGGGACTGCCTCAGTGGGGTTGGCAAACGCAAGGCCAGGTTACTACAACGCCAGTACCACCATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCGGCTACCTTTCCATTGGCTACCATCTATAGCTCAATTCCCCATAATATCGGTTTTGACCCATCTAGTGCAGCAGCTGGCAGCAACACAACTCAACATTGCCGGATGAAGCCCCCGCACGCGCCCCACTAG	1308	0.461	MFDLNLNADSTDTSHKDESIRFSDELTEASWNQMAKSGTSNSSNVYADGSNNGGYEDSCSTRGGDAFTFNFDILKEEGGKKVANRELFLFSETKGVDGESANWQGQALCALPSRKNWMSLSFDHQGGNGEMKMVQVQQQPQQQVKKSRRGPRSRSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLNDYEEDLKQVYISWAIRQRSDSHNLDLNLGIATPGSGPEENRGHQLQPIPYNMHTGRSSRFFSLGSLISFIEVLIRMGSLNLQKEINVDPSLNRPVVTEERPFVWNGIYPSFFPNEVNFIVRHIDFQSEYYSCISERVERISRDHSLGLPQWGWQTQGQVTTTPVPPFSTAASSGFSISATFPLATIYSSIPHNIGFDPSSAAAGSNTTQHCRMKPPHAPH	435

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g1212	435	CDD	AP2	157	212	IPR001471	GO:0003700\|GO:0006355
	Lele11g1212	435	SUPERFAMILY	DNA-binding domain	156	214	IPR016177	GO:0003677
	Lele11g1212	435	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	128	223	-	-
	Lele11g1212	435	MobiDBLite	consensus disorder prediction	416	435	-	-
	Lele11g1212	435	SMART	rav1_2	157	219	IPR001471	GO:0003700\|GO:0006355
	Lele11g1212	435	MobiDBLite	consensus disorder prediction	138	157	-	-
	Lele11g1212	435	ProSiteProfiles	AP2/ERF domain profile.	157	213	IPR001471	GO:0003700\|GO:0006355
	Lele11g1212	435	FunFam	AP2-like ethylene-responsive transcription factor	156	215	-	-
	Lele11g1212	435	Pfam	AP2 domain	157	205	IPR001471	GO:0003700\|GO:0006355
	Lele11g1212	435	Gene3D	AP2/ERF domain	156	215	IPR036955	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g1212	Lele-ChrLele11	19242351	19246319	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g1212	1	397	AP2-EREBP Transcription Factor Family	AT5G60120	37.303	8.66e-53	182

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele11g1212		AP2	1.1e-09	CL0081

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