Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1199 ATGGATTTAGTCAATAGTTGCCAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTACTCACCCAGTTAGGCCTTTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATCGGATATTAGCCATTCTCTCAGATGAGCAAGTTTCCAAATTGTGGGCTAAAAAGAATGCTGTTGGAAAAGATCAGGTGGCAAAATTAGTGGATGACACATATAGAAAGATGCAGATATCTGGAGCAACTGAGCTGGCATCAAAAGGTATGTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAATTGAAGATTCCTTGCAGTCAGTTACAAAGATTCGCTGTCTCTGTGGAAGTTCTTTGGAAACAGAGGCATTGATCAAGTGTGAGGATGCAAGATGTCAAGTATGGCAACACATGAGTTGTGTTATAATTCCAGATAAACCTACTGAAGGCATGCCACCAGTTCCTGATAAATTCTATTGTGAGATCTGCCGTCTCAGTCGAGCTGACCCTTTTTGGGTTCCAGTGGCACATCCATTGTTTCCTGTGAAGTTGACCGTAACCAATGTTCCGACTGATGGCACTAACCCTGTGCAGAGTGTGGATAGATCATTTCAACTTACAAGAGCGGACAAGGACTTGGTGTCTAAATCAGAATTTGATGTCCAGGTTTGGTGCATGCTTTTGAATGACAAGGTCCCATTCAGGATGCAATGGCCTCAATATACAGATCTACAGGTCAATGGTGTACCAGTTCGTGCCATCAACAGACCTGGTTCACAATTACTTGGGGCTAATGGTCGAGATGATGGTCCAATTATCACGCCATATACAAAAGATGGAATAAACAAGATTTCCTTAACGGTGTGTGATGCTCGCCCTTTCTGTTTAGGGGTTCGTATTGTGAGAAGGAGGACCATGCAACAGATCCTAGGCATAATTCCAAAAGAGTCTGATGGGGAGCCTTTTGAAGATGCTCTTGCACGTGTCTGCCGATGTGTCGGTGGTGGAAATGCAGATGATAAGGCTGATAGTGACAGTGATCTAGAAGTTGTTTCAGATACCTTTAGCGTCAACCTCCGATGTCCAATGAGTGGTTCAAGGATGAAGGTTGCTGGAAGATTCAAGCCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAGCGGTCGAGGAAGTGGCAATGTCCTATCTGTCTCAAAAACTATACATTGGAGAATATCATTACAGACCCTTACTTCAACCGTATCACATCTAAGATGATAAATTGCAGTGAAGATGTGACAGAGGTTGAAGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCTAAGAGTGAAACTGAATGCCGAGATTTGGGTAATCTTGCACAATGGCACTTGCCTGATGGATCGCTATGTGTTTCTACTGATGAAGAGGTCAATCGAGTGGATGCGTTTAAGCAGATCAAGCAGGAGGGTGTTTCTGACAGTCCTACTTGTTTGAAACTTGGCATGAGGAAGAATCACGATGGAGTTTGGGTTTTCAGCAAACCCAATGACACCAATACATCATCAGGCAATAGATTGAAAGAGAACTTTGAAAATCATGAACAGGTGGTTATTCCAATGAGCAGCAGTGCCACTGGGAGTGGCCGTGAGGGTGATGACCCTAGTGTAAATCAGGGTGGTGGTGGACATATTGATTTCTCTAACAATGGGACGGAAATGGATTCTTTCTATCTTAATAATGTTGATTCAGCATATGGGTTTGCAGAAAATAATGCTGCTGCTCCAACTGGGGATGCTGAAGTTATTGTTCTAAGTGATTCTGAGGAAGAGAATGACATGTTGGTATCTTCTGCAAATGACTACAAGAATAATCGAACTGATGCTGTTGGTGTTGGTTACCCTGTGCCGCCTTCTGGGATTGCTGATTCCTATGCAGAAGATCCCACCCTTGGTGGCTTGGGACTTTTTGGTACTAATGAAGATGAGTTTGATATGCCTTCCCTTTGGCCACTGCCTTCTGGAACTCAGGCAGGTGCAGGATTTCAGTTATTCACTTCTGATGCGGATGTGTCAGATGCATTGGTCCATCTGCAGCATGGTCCTGTTAATTGTTCCACATCATTGAATGGTTATGCATTGGCCCCAGACACTGCTTTGGGATCTAGTACTCTCATGCCAGATGCCTCTTCTGGTCGGTCTGATGCTGATTTAAATGGTGGCTTAGTTGACAATCCGCTGGCGTTTGCTGGAGATGATCCCTCACTCCAAATATTTCTCCCCACTAGACCTGCAGAACCATCTGGGCAGCATGAATTGAGAGACCAGGCAGATGTGTCTAATGGTGTCTGCAATGAGGATTGGATTTCTCTTAGGCTTGGAGGTGGCGCCAGTACCGCTAACAGCCATGCTACAGCTCCAAATGGTCTGAATTCTAGACAGCAAATTCCGTCTAGAGAACCATCCACAGATGCTATGGCTGATACTGCTCCTTTGCTTCTTGGTATGAATGATGCTAGATCTGACAAGGCAATTAGACAAAGGTCGGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAAGAAGGTCCCGCCTGTATTTCTCTATTGATTCGGATTCAGAGTAG 2625 0.4404 MDLVNSCQEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDEQVSKLWAKKNAVGKDQVAKLVDDTYRKMQISGATELASKGMSDSSNVKIKGEIEDSLQSVTKIRCLCGSSLETEALIKCEDARCQVWQHMSCVIIPDKPTEGMPPVPDKFYCEICRLSRADPFWVPVAHPLFPVKLTVTNVPTDGTNPVQSVDRSFQLTRADKDLVSKSEFDVQVWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTVCDARPFCLGVRIVRRRTMQQILGIIPKESDGEPFEDALARVCRCVGGGNADDKADSDSDLEVVSDTFSVNLRCPMSGSRMKVAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYTLENIITDPYFNRITSKMINCSEDVTEVEVKPDGSWRVKAKSETECRDLGNLAQWHLPDGSLCVSTDEEVNRVDAFKQIKQEGVSDSPTCLKLGMRKNHDGVWVFSKPNDTNTSSGNRLKENFENHEQVVIPMSSSATGSGREGDDPSVNQGGGGHIDFSNNGTEMDSFYLNNVDSAYGFAENNAAAPTGDAEVIVLSDSEEENDMLVSSANDYKNNRTDAVGVGYPVPPSGIADSYAEDPTLGGLGLFGTNEDEFDMPSLWPLPSGTQAGAGFQLFTSDADVSDALVHLQHGPVNCSTSLNGYALAPDTALGSSTLMPDASSGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAEPSGQHELRDQADVSNGVCNEDWISLRLGGGASTANSHATAPNGLNSRQQIPSREPSTDAMADTAPLLLGMNDARSDKAIRQRSDSPFSFPRQKRSRRSRLYFSIDSDSE 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1199 874 MobiDBLite consensus disorder prediction 840 856 - -
Lele11g1199 874 ProSitePatterns Zinc finger PHD-type signature. 113 163 IPR019786 -
Lele11g1199 874 SUPERFAMILY FYVE/PHD zinc finger 108 167 IPR011011 -
Lele11g1199 874 ProSiteProfiles Zinc finger SP-RING-type profile. 344 427 IPR004181 GO:0008270
Lele11g1199 874 MobiDBLite consensus disorder prediction 798 823 - -
Lele11g1199 874 Pfam PHD-finger 112 164 IPR019787 -
Lele11g1199 874 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 618 - -
Lele11g1199 874 Gene3D SAP domain 1 61 IPR036361 -
Lele11g1199 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 445 IPR013083 -
Lele11g1199 874 MobiDBLite consensus disorder prediction 542 568 - -
Lele11g1199 874 SMART PHD_3 112 164 IPR001965 -
Lele11g1199 874 Pfam MIZ/SP-RING zinc finger 357 405 IPR004181 GO:0008270
Lele11g1199 874 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Lele11g1199 874 Pfam SAP domain 14 42 IPR003034 -
Lele11g1199 874 SUPERFAMILY SAP domain 1 63 IPR036361 -
Lele11g1199 874 SMART sap_9 11 45 IPR003034 -
Lele11g1199 874 MobiDBLite consensus disorder prediction 798 821 - -
Lele11g1199 874 MobiDBLite consensus disorder prediction 835 874 - -
Lele11g1199 874 CDD PHD_Bye1p_SIZ1_like 112 163 - -
Lele11g1199 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 169 IPR013083 -
Lele11g1199 874 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1199 Lele-ChrLele11 19132395 19141930 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele11g1199 PHD 6.8e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0199 29 1157548 1165333 Lele11g1199 11 19132395 19141930 CCT
Lele30g1206 30 14819218 14828754 Lele11g1199 11 19132395 19141930 CCT
Lele09g1198 09 20931760 20942696 Lele11g1199 11 19132395 19141930 hybridization
Lele10g1175 10 22939396 22948718 Lele11g1199 11 19132395 19141930 hybridization