Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1197 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCCTTCTGCGATGGCCCCTGTGGGGAGCAAGGCGCTTGTGCTTCTTGTTTCTCCCCTTCCACTTCTTCATCTTCCAATTCGCCTTCACCTCGTGTTTCTTCTTCTTATCTTGAACTCTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTCCCTAACAAAGGAAATGTAGTAGTTTACTTTCCCCAAGGTCATCTTGAACAGCTTGCCTCTTTCTCTCCTTTCTCTCCCATGGACAGGCCCACCTATGACCTTCAACCACAAATCTTCTGCAGGGTCGTCAATGTCCAGCTACTTCGTATTTGCTTTTTCCCTGAACAGGCCAACAAGGAGAATGATGAGGTTTACACGCAGGTTACCTTGCTCCCCCAGGCAGAGTTAGCGGGGGTGCACTTCGATGGCCAAGAACTTGAGAAATTGGGAGCACATGAGGATGAAAATGGAGGATTACCTGCAAAATCAACCCCTCATATGTTCTGTAAAACGCTTACCGCTTCTGATACTAGCACTCATGGGGGTTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGCTTTCCTCCTCTGGATCATAAGCAGCAAAGACCCTCCCAAGAGCTTGTTGCAAAAGACCTGCATGGAGTAGAGTGGAAATTTCGCCATATTTACAGAGTACTCTTTCTGAGGGGTGAAAGTGGAGAACTGAGATTGGGAATCAGGAGATCTGTTCGGCCGAGAAATGGTCTTCCTGAGTCAATTATCGATGATCAGAAGAATTGCTATCCCAATTTCCTATCTTCAGTGGCTAATGCTATATCCACCAGAAGTGTGTTTCATGTTTTCTACAGCCCAAGGTTCTTGACATGGGCAAGTCATGCAGAGTTTGTTGTACCCTACCAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGGACAAGATTTAAGATGAAATTTGAAATGGATGAATCTCCCGAAAGAAGGTGTAATGGTGGTATAGTGACTGGAATGCGTGATTTGGATCCCTACAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGACGAGGATATTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAGCCTTCTGTTTCTCTCCCACCCTTGAGCATTCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTGGCGGTGCATTTATGGACTTTGAGGAGTCTGTAATATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCATCATACTATTTTGGGCGTGATGCAGTGACCAAACACAACCAGCCAGATTTTGAGATGAGTCGTCTTAGTCATCCAAATCTTGCATCCACTGGATTAAGTAAAGCTACTGCTGCTGAACTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTTGCAGAGACTAATAAGTTTATGAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGCAATCCCTGAAAGGAAAGGCTGATTTTAACCTTGGAGCCGGGAGTAAACCCAATTCCAGTTGCACAACTTTCAACCGACGTCAGCCATCCAAACCCAACTTCAACACTTTAGGATCAGAAAGCCTTCAAACTGCTTATTTCCCTTTCAGTGACGTTCACCGAGCTGGTCAAAGTCAAAGTAGCCTGTTGTGCTCTAAACCTGCAAATTTCCAGAGAGAGAATCTCCACACTCCTTCCACTCAGGCAGAGCTCTCAACAAAGGAAGTTGGACGATCGGATCTCTCGAACAAGGATAAGCGACAGGACAGTTTTTCTGCTGCTGCTGCTTCCTTAGGAGTAACAAATCTAAGGATTCCAAATGATGAGAATTTTGAGGGAAAGGTAAATGGCTGTAAACTATTTGGGTTTTCCTTATCTGGGGAAGGCAACTCACAGAATTTACAGAGCTCTGCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTCGGAAGAGCCATTGATCTCTCAAGACTTAGCAGCTACAATGATCTGTTGAGTGAACTTGAGCGACTGTTTGGCATGGAAGGCCTTATACAGGATCCTGATAAGGGATGGAGGGTCCTCTACACGGATAGCGAAAACGACATAATGGTCGTAGGCGATGATCCATGGCATGAGTTCTGCAGTGTGGTGTCTAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGACGATCACTGATGATACCCAGAGCTGTTTGGAACAGGCAACAGGAGTAATGGAGGCTTCCAAGTCCTCATCTGTGGGCCAGCCAGATTCTTCTCCGACAGAAGTATAG 2340 0.4551 MEIDLNHAVTEVEKNAFCDGPCGEQGACASCFSPSTSSSSNSPSPRVSSSYLELWHACAGPLTSLPNKGNVVVYFPQGHLEQLASFSPFSPMDRPTYDLQPQIFCRVVNVQLLRICFFPEQANKENDEVYTQVTLLPQAELAGVHFDGQELEKLGAHEDENGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQQRPSQELVAKDLHGVEWKFRHIYRVLFLRGESGELRLGIRRSVRPRNGLPESIIDDQKNCYPNFLSSVANAISTRSVFHVFYSPRFLTWASHAEFVVPYQKYVKSIKNPMTIGTRFKMKFEMDESPERRCNGGIVTGMRDLDPYRWPKSKWRCLMVRWDEDIATNHQDRISPWEIEPSVSLPPLSIQSSPRLKKLRTGGGAFMDFEESVISPKVLQGQENTGFASYYFGRDAVTKHNQPDFEMSRLSHPNLASTGLSKATAAELMRVHPSSYAGFAETNKFMRVLQGQEICPLQSLKGKADFNLGAGSKPNSSCTTFNRRQPSKPNFNTLGSESLQTAYFPFSDVHRAGQSQSSLLCSKPANFQRENLHTPSTQAELSTKEVGRSDLSNKDKRQDSFSAAAASLGVTNLRIPNDENFEGKVNGCKLFGFSLSGEGNSQNLQSSAAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLIQDPDKGWRVLYTDSENDIMVVGDDPWHEFCSVVSKIHIYTQEEVEKMTIGTITDDTQSCLEQATGVMEASKSSSVGQPDSSPTEV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1197 779 SMART B3_2 173 249 IPR003340 GO:0003677
Lele11g1197 779 MobiDBLite consensus disorder prediction 760 779 - -
Lele11g1197 779 SUPERFAMILY CAD & PB1 domains 654 732 - -
Lele11g1197 779 Gene3D - 648 742 - -
Lele11g1197 779 CDD B3_DNA 171 230 IPR003340 GO:0003677
Lele11g1197 779 Pfam Auxin response factor 274 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele11g1197 779 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 231 742 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele11g1197 779 MobiDBLite consensus disorder prediction 574 588 - -
Lele11g1197 779 Pfam AUX/IAA family 647 737 IPR033389 -
Lele11g1197 779 Gene3D - 171 231 IPR015300 -
Lele11g1197 779 ProSiteProfiles PB1 domain profile. 653 737 IPR000270 GO:0005515
Lele11g1197 779 FunFam Auxin response factor 315 388 - -
Lele11g1197 779 Pfam B3 DNA binding domain 173 230 IPR003340 GO:0003677
Lele11g1197 779 Gene3D - 316 388 - -
Lele11g1197 779 SUPERFAMILY DNA-binding pseudobarrel domain 165 242 IPR015300 -
Lele11g1197 779 MobiDBLite consensus disorder prediction 574 599 - -
Lele11g1197 779 FunFam Auxin response factor 648 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1197 Lele-ChrLele11 19120283 19125025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1197 48 777 B3 DNA Binding Superfamily AT5G60450 55.123 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele11g1197 AUX_IAA 3e-07 CL0072