Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1193 ATGTCCAGAGCTCTTGGCGCACAACCCTATGCCCTGGAACCGCTAAACCCTCAAACAGCATCTTCCCGCGAAATCAAAGCAGAGCAAGAAATTCCAAGAGAATACCAAACCGGCGCTAAGTTTCCCCCTGGATTCAGATTCCATCCTTCTGATGAAGAACTCATCATTCATTACTTACAAAACAAAATCACCTCTCGTCCACTTCCAGCATTGATTATTGCAGAAATTGATCTGTACAAGTATAACCCGTGGGAGTTACCCAAGAAGGCATTGTTTGGGGAGGATGAATGGTATTTCTTTAGCCCCAGAGACCGAAAGTACCCTAATGGATTAAGACCAAACAGAGCCGCAGCTTCAGGGTATTGGAAGGCCACTGGAACAGACAGACCTATACTAAGCTCCTGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTCTTTTACACAGGTCGGCCTCCCAGAGGGGCTAAGACAGATTGGATTATGAATGAATACAGATTGGTTGACACTAACAGCAAACCTTCCAGGTTTAAAGGTTCCATGCTACTGGATGAGTGGGTGCTATGCCGGGTTCGACACAAAGGCTACTCATGGAAGAATTATGGTGTGAATCAGGAGCATCACTTGCAGGCAAAGCTTCCAGGCTGCGAGCAATTCCCAGGAAACACAGAACTTGAAGCTAACATCTTCACAAATTATCAGTACAGAGACTATCGAATCTTAGCTTCTATTCTTGTTGGCGAACCAGTAGTTCCCATAAAGAACAAGTCAAGTGTTAGCTTTAAAGGCAGCAAGAGCGACAACCTCAATTCCACGTGCAACTACTTCGACACCTTGAGTACAAAATCTAACGAAGATTGTCAATACGAGAATCTCATTTCTTTTAACAGGGATCTTCACATTGAGAACAAAATTGATCATTTTACTGGCAAGGTGTTGACGAGTAGTGACATGTATTACTGCTATAGTCGAAATCAGTCTCAAGATGGCATCCTCAATGAGAGTCCACCAGATCCTACCATCAATTTTGAACAACTTAACAAATTGACCTCCACAGGAAGATACTCTACGTTTCCTTATTCATACCTAAATTAA 1098 0.4335 MSRALGAQPYALEPLNPQTASSREIKAEQEIPREYQTGAKFPPGFRFHPSDEELIIHYLQNKITSRPLPALIIAEIDLYKYNPWELPKKALFGEDEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDRPILSSCGSKRIGVKKALVFYTGRPPRGAKTDWIMNEYRLVDTNSKPSRFKGSMLLDEWVLCRVRHKGYSWKNYGVNQEHHLQAKLPGCEQFPGNTELEANIFTNYQYRDYRILASILVGEPVVPIKNKSSVSFKGSKSDNLNSTCNYFDTLSTKSNEDCQYENLISFNRDLHIENKIDHFTGKVLTSSDMYYCYSRNQSQDGILNESPPDPTINFEQLNKLTSTGRYSTFPYSYLN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1193 365 Gene3D NAC domain 50 200 IPR036093 GO:0003677|GO:0006355
Lele11g1193 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 40 278 - -
Lele11g1193 365 SUPERFAMILY NAC domain 38 195 IPR036093 GO:0003677|GO:0006355
Lele11g1193 365 FunFam NAC domain-containing protein 72-like 50 200 - -
Lele11g1193 365 Pfam No apical meristem (NAM) protein 42 168 IPR003441 GO:0003677|GO:0006355
Lele11g1193 365 ProSiteProfiles NAC domain profile. 41 195 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1193 Lele-ChrLele11 19101914 19104838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1193 41 198 NAC Transcription Factor Family AT1G61110 67.470 2.19e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele11g1193 NAM 1.1e-37 No_clan