Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1192 ATGGTGGGTCATGTCTCGGCTAGTGTGGAGGGTGGGAGAGAGAAGAATATGCAAAAGGAAGCGTTAGGTGTTAGGGAGGGTGGTGGACATATCAAGCGCCATCTGAGCTTCAACAGCGCTGGTTTAGTTCACTGCATACATATTCCCACTTTGGCTCTTCAAAACATGATGCCTGCAGATTCCATTTCTGTTCCTTCCACCGTTAACTCCTTCATCGACCCAAACTCCAATCCTAACCCTAATTCAAATCCAGTCAAGAAAAGGAGAAATCTCCCCGGAACACCAGATCCGGATGCAGAAGTGATAGCACTATCGCCAAAGTCACTCATGGCGACAAATCGTTTCGTATGTGAAATCTGCAATAAGGGATTCCAGAGGGACCAGAACTTGCAGCTGCACCGCCGTGGGCACAATCTTCCGTGGAAGCTCCGCCAGAGAACCCACAAAGAAGTGAGGAAGAAGGTGTATGTTTGCCCTGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCACTAGGAGACCTCTCAGGTATCAAAAAACACTTCAGCAGAAAGCATAGCGAGAAAAAATGGAAGTGTGAAAAATGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAAGCCCATAGCAAGATTTGTGGCACTAGAGAGTACAAATGTGACTGTGGCACCATTTTCTCCAGGAAGGACAGCTTCATAACTCACAGGGCTTTCTGTGACGCCTTGGCCGAAGAAAGTGCGAGAACAACAATAACAACTGTGCCTTCAGCTTTCACTAATCTGAGAAACGACCAGTTGATGATGAGCATGAATAATCATCAAACACCACGAATAATCCCTGAAATGTTTTTAGGGTTTCATACAGATCAATTTGTAGGTAATTCCGAAGGAGCATTGGGTAATTTTGGTCATCAGCTTAATCATCACCACCACCTCAACATTGGAAGCAACAATATGAATTCCCAGTTTCCGAATTTAGTCCAAGGCATGGAAATGTTTGGGACATCAACCCATCATCATCATCAGACACAGTGGGTTAACGTTAACCGATTCCCAGAAGCAGATTCATCTATTACAACAAGTGCCAACAACGTTAACATGTGTTGTGTGTCTGGAATAATGCCGCATGGACTGAAACAAGAACCAGAAGAAAACAAACTAGAGTTGTCGCATAGTATAGGAGCTTTGTACTCGTGTCATCAGATTCAGAACTCGCAAGCAGCAGTAGGAGAAGCGAGTCGCATGTCAGCCACTGCACTCTTACAGAAAGCAGCACAAATCGGATCTACAACCACTAATAACAATGTCGTCAACAACACATCCTCCTCCTTCAACTCTATCAACCACTTCGGATTAATGGGCTCGTCTGTTTTAAACTCCAACAACAACAACACTAACGTTGACGTTCACAAAATTTTCAAGCAAACGGATAACAAAAGCACCTATCTTGGAGGAGGGTTTGCAAGTGCCGTCGTCAAGGGTTTGCGTTCAGGCTCGAATGAAGAGGAACTAGATTTAACCAGAGACTTTCTGGGCGTTGGAGGGGACTCAATGAGCGGACCCTTTCTGGAGCAAGAGTTAGCCAAGTTCAATACTACAATAGGCTCAGCCTCGTCAGCTTCAGCCTTGGACCTGAGCCAGTACGGTGTGCATCATTGA 1659 0.4569 MVGHVSASVEGGREKNMQKEALGVREGGGHIKRHLSFNSAGLVHCIHIPTLALQNMMPADSISVPSTVNSFIDPNSNPNPNSNPVKKRRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTHKEVRKKVYVCPEKTCVHHDPSRALGDLSGIKKHFSRKHSEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEESARTTITTVPSAFTNLRNDQLMMSMNNHQTPRIIPEMFLGFHTDQFVGNSEGALGNFGHQLNHHHHLNIGSNNMNSQFPNLVQGMEMFGTSTHHHHQTQWVNVNRFPEADSSITTSANNVNMCCVSGIMPHGLKQEPEENKLELSHSIGALYSCHQIQNSQAAVGEASRMSATALLQKAAQIGSTTTNNNVVNNTSSSFNSINHFGLMGSSVLNSNNNNTNVDVHKIFKQTDNKSTYLGGGFASAVVKGLRSGSNEEELDLTRDFLGVGGDSMSGPFLEQELAKFNTTIGSASSASALDLSQYGVHH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1192 552 SUPERFAMILY beta-beta-alpha zinc fingers 114 211 IPR036236 -
Lele11g1192 552 FunFam protein indeterminate-domain 5, chloroplastic-like 169 248 - -
Lele11g1192 552 MobiDBLite consensus disorder prediction 68 88 - -
Lele11g1192 552 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Lele11g1192 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 75 525 IPR031140 -
Lele11g1192 552 SMART c2h2final6 115 137 IPR013087 -
Lele11g1192 552 SMART c2h2final6 156 186 IPR013087 -
Lele11g1192 552 SMART c2h2final6 191 211 IPR013087 -
Lele11g1192 552 MobiDBLite consensus disorder prediction 68 98 - -
Lele11g1192 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 137 IPR013087 -
Lele11g1192 552 Gene3D Classic Zinc Finger 149 239 - -
Lele11g1192 552 FunFam protein indeterminate-domain 12-like 94 162 - -
Lele11g1192 552 Gene3D Classic Zinc Finger 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1192 Lele-ChrLele11 19086618 19089605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1192 57 249 IDZ Gene Family AT3G50700 77.778 5.21e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g1192 None None None