Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1186 ATGTTGGATGCGAATCGTAGCGGCCCCTTTCCTTCTTCTGAAATCAGATTTTCAATTAAGAAAGTTTGCTCAGCTGAGAATACATCGACGGCTTACAGTTCTAATCTCCAGATTTTCAATCGGAGTTTTTCTTTTGCTAAGATGGATTGTTGTAATTGCTTCGGGTTCATCCGAAAATCTAAACAGCCGAGTGCTATGTTCGGTATCAAGAATAATCTCTCTCAGGAGCTGTTGTTGGATGAAGACATTGAAGATGACGATGGCTCATATGGTGCTGAGGTTTCTAACAATGGCAGTGGCGATGATGGTGAAGTGCAAATTCGTCCCAACCGGTCTGAAGATATTTTGAAATTGAGAGCAGAGAATGATATGATTTGTAGGCAATTTCCTGTTAAGGAAACTCACAAAGTTGTTCGCACAGAGGATGAAAACGGAAACAAGATGATAAATGAGTATGTTCGTGAACATAAGATAGGTTCTGGTAGCTATGGGAAAGTGGTTTTATATCAAAGTTCTGTTGATGGTAAGCACTATGCAATCAAGGTCTTTCACAAATCTCATTTACTGAAGGTTCGAGTTGCACACTCAGAGACTGCCATGACAGATGTTCTGCGTGAGGTACTCATCATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATCACTTTTACATGGGGCTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTACAGGACCTCATTGTGGCTTAGGTGAAGAGACTGCTAAGAGATACTTGCGTGACATTGTTTCAGGATTAATGTATCTACATGGTCATAATATTGTTCATGGGGATATTAAACCTGATAATCTGTTGCTTACTCGACATGGTACGGTGAAGATAGGGGATTTCAGTGTTAGCCAGGCATTTGAGGATGATAATGATGAACTTCATCGGTCCCCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTGGGTGTTCCCTATCATGGTAAGGCTGCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATACTGGGTGAATATCCATTTCTTGGTGATACTCTTCCAGATACTTACGATAAAATAGTCAATAACCCTTTAGTCCTACCAGATAATTTGAACCCGCAATTGAAGAACTTGCTAGAAGGACTACTTTGTAAAGATCCAAAACTAAGGTTGACGTTAGGTGATGCTGCAAAGCATAGCTGGGTTATAGGAGACGATGGGCCAATTCCTGAGTACTTGTGTTTCTGCAAACGCGAGAACTTGAAGAGGGAAGACTTAGATGGGAGCAATATACTCGCTTGA 1335 0.4142 MLDANRSGPFPSSEIRFSIKKVCSAENTSTAYSSNLQIFNRSFSFAKMDCCNCFGFIRKSKQPSAMFGIKNNLSQELLLDEDIEDDDGSYGAEVSNNGSGDDGEVQIRPNRSEDILKLRAENDMICRQFPVKETHKVVRTEDENGNKMINEYVREHKIGSGSYGKVVLYQSSVDGKHYAIKVFHKSHLLKVRVAHSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMGLEYVEGKWVCEGTGPHCGLGEETAKRYLRDIVSGLMYLHGHNIVHGDIKPDNLLLTRHGTVKIGDFSVSQAFEDDNDELHRSPGTPVFTAPECCLGVPYHGKAADTWAVGVTLYCMILGEYPFLGDTLPDTYDKIVNNPLVLPDNLNPQLKNLLEGLLCKDPKLRLTLGDAAKHSWVIGDDGPIPEYLCFCKRENLKREDLDGSNILA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1186 444 CDD STKc_LKB1_CaMKK 158 413 - -
Lele11g1186 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Lele11g1186 444 MobiDBLite consensus disorder prediction 88 107 - -
Lele11g1186 444 FunFam Serine/threonine-protein kinase GRIK2 142 442 - -
Lele11g1186 444 ProSiteProfiles Protein kinase domain profile. 152 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1186 444 Pfam Protein kinase domain 152 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1186 444 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Lele11g1186 444 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 109 415 - -
Lele11g1186 444 SUPERFAMILY Protein kinase-like (PK-like) 148 423 IPR011009 -
Lele11g1186 444 SMART serkin_6 152 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1186 444 Gene3D Transferase(Phosphotransferase) domain 1 250 419 - -
Lele11g1186 444 FunFam Serine/threonine-protein kinase Ssp1 146 248 - -
Lele11g1186 444 Gene3D Phosphorylase Kinase; domain 1 146 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1186 Lele-ChrLele11 19044001 19053066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1186 147 420 CBL-interacting serine-threonine protein kinases AT5G35410 32.117 3.23e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lele11g1186 Pkinase 6.1e-57 CL0016