Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1183 ATGAGTTCTGAGGAAAAGGCTGTGAGTGAAGGACATCCCGCAGCTTCGTGCCTAAGAACGGTTTCTCTTCCAGTGCCTAAGGTTGATGATCCAATGGGAATGTATGAGGAATCAACTCGTGTCCGTCACTGGAAGAGACAAAATCTTCTTCTAGAAATACCCCCAAGAACATCAGAGGAGCATTCTCAAGATTTTGTTGGAATTAAGATGCCAATGACTCCGAGTCCCACTCACACTCCCACTCCCAAGAGAGTGAATTTTCTTATGACTTCACGCTCTGTTGATGCGCCGGTTCATAATTCTCCTGGGCCTTCCGCATCAAGAGGCAAATCATCCATTAAAAGTATCTTACCAAAGTTGAACTTCAAGCATAAGACATCATCAGATATTGGAAAGGCTTTTACTGCGGCTCCAGAAAGTTCTTCTTCAGTCCATCGAGAAAAGCTTTCAATTGCGAGTTCATTGTCCCTTACTAAGATATTTACACCTAGAATTAAGAGAACGTCATCTTTACCAATAGATGAACTTCATTCAAACTCAGAATATGTTCATGTTGAAAGTGTCGGCGGATCTCTATATAGTACGAAGGAGCAGGGGCAGATAGCCCGCTCTCAGTCGGTGCCTGTCACTGATCTAGATAAGGGCATAAGGATAATGGATTCGTTTTACCGTGTTATTCCTTCCACCCCTCATGCAAAGGGAAAAAGAGAATTGTTGACAACATCCCCATCCAAGGATGCTGAAAACAACAATGAAGACGATGATGAAGGTGAAGATATATCTGAAGAAGACGCGGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGCGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGCGCCATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGACGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTCACACTCTTAAGGATCCAAAATGTTGTAAATCAGAATATGGCTAATAGGTCTCAGCAGACAGATACGAGTGCATACAGGGTTTGGCAGGAAGTTCCTGTGCTTGTAATTGTGAGCATGCTGGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGCATAGCAGGTTCATCTGGTTTTATGCATCCGCCCAATTTGCTCTCATGGTTTTTTTCGCACATATATTTTACTCACTGGTGCATGTGCAGGCGGTTTTGGCGATCCTTCTTGCAACATTTGCAGGGTTTGGTATAGTGATGAGTGGGAGCTCTGTTCTTGATGAGATTGTTCGATGGAGAAGAAGATGGCTGGCAGCATCAGAGCAGCATCACGCTCCTCATGGTGCAATGCAAGCACATTCAGGCCCTCCCGGCAGCGGCGGTCAAACAGAGGCGCTAAGTCAACAAAACTCGGTTTAG 1512 0.4478 MSSEEKAVSEGHPAASCLRTVSLPVPKVDDPMGMYEESTRVRHWKRQNLLLEIPPRTSEEHSQDFVGIKMPMTPSPTHTPTPKRVNFLMTSRSVDAPVHNSPGPSASRGKSSIKSILPKLNFKHKTSSDIGKAFTAAPESSSSVHREKLSIASSLSLTKIFTPRIKRTSSLPIDELHSNSEYVHVESVGGSLYSTKEQGQIARSQSVPVTDLDKGIRIMDSFYRVIPSTPHAKGKRELLTTSPSKDAENNNEDDDEGEDISEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVVNQNMANRSQQTDTSAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVHSRFIWFYASAQFALMVFFAHIFYSLVHVQAVLAILLATFAGFGIVMSGSSVLDEIVRWRRRWLAASEQHHAPHGAMQAHSGPPGSGGQTEALSQQNSV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1183 503 SUPERFAMILY RING/U-box 263 318 - -
Lele11g1183 503 SMART ringv_2 266 315 IPR011016 GO:0008270
Lele11g1183 503 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Lele11g1183 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 322 IPR013083 -
Lele11g1183 503 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Lele11g1183 503 MobiDBLite consensus disorder prediction 487 503 - -
Lele11g1183 503 MobiDBLite consensus disorder prediction 478 503 - -
Lele11g1183 503 PANTHER OS02G0165000 PROTEIN 30 477 - -
Lele11g1183 503 MobiDBLite consensus disorder prediction 233 260 - -
Lele11g1183 503 CDD RING_CH-C4HC3_MARCH 267 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1183 Lele-ChrLele11 19018088 19021732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1183 253 321 C3H Transcription Factor Family AT2G37950 45.714 2.31e-13 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1182 09 20834156 20837808 Lele11g1183 11 19018088 19021732 hybridization
Lele10g1157 10 22822265 22827220 Lele11g1183 11 19018088 19021732 hybridization