Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1178 ATGGAAGGCGAGAAGCGTAGGAGAGAAGAGAAGCAGACATTGTGCAATGCGAGGAGAAGGAAAAGGAAAGAAAAGTGCTCCTGGAATGGAGCCGAACGAACACGCACAATCAGCGCTGGCCTAGCGTACGTAGTTCAAACAACAATGGGTAAAGACGTTGAAGTTGCGGAGCAAAGAGAGACGACGGCGAAAGACTACCAGGACCCGCCTCCGGAGCCGTTGATTGACCCGGAGGAGCTAACCAAGTGGTCATTGTACAGAGCCGTCATAGCGGAGTTCATAGCAACCCTTCTCTTCCTATACATAACTGTGCTGACCATTATCGGGTACAGCCAACAAACTTCCGGCACCAACCCTGACGCCCAGTGCGGAGGAGTCGGCGTCCTCGGTATCGCCTGGGCCTTCGGTGGCATGATCTTCATTCTCGTTTACTGCACCGCCGGTATCTCTGGAGGGCATATTAACCCGGCGGTGACATTCGGGCTGTTCGTCGGAAGAAAGGTGTCGCTGATAAGGGCGGTATTGTATATCTTAGCACAAATGGCCGGAGCTATCTGCGGGACTGGACTGGCCAAGGCCTTCCAGAAATCTTACTACAACAGGTATGGAGGCGGAGCCAACTTCGTACACGATGGTTACAGCACGGGCACGGCTTTGGGTGCTGAGATAATCGGAACCTTCGTTCTCGTCTACACTGTCTTCTCTGCAACTGATCCCAAGAGGAACGCCAGAGATTCCCACGTTCCTGTGTTGGCACCACTTCCCATTGGGTTCGCCGTGTTCATGGTTCACTTGGCTACCATCCCGGTTACTGGTACTGGAATCAACCCCGCAAGAAGTTTCGGCGCTGCTGTTATCTACAACGATGGCAAGATCTGGGATGATCATTGGATATTCTGGGTTGGACCAATAATTGGAGCTGCGGCGGCTGCATTCTACCACCAACACATTCTGAGAGCTACCGCCATAAAAGCTCTTGGCTCTTTCAGGAGCAACGCTTAA 1002 0.5269 MEGEKRRREEKQTLCNARRRKRKEKCSWNGAERTRTISAGLAYVVQTTMGKDVEVAEQRETTAKDYQDPPPEPLIDPEELTKWSLYRAVIAEFIATLLFLYITVLTIIGYSQQTSGTNPDAQCGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAVLYILAQMAGAICGTGLAKAFQKSYYNRYGGGANFVHDGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDGKIWDDHWIFWVGPIIGAAAAAFYHQHILRATAIKALGSFRSNA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1178 333 ProSitePatterns MIP family signature. 153 161 IPR022357 -
Lele11g1178 333 MobiDBLite consensus disorder prediction 1 17 - -
Lele11g1178 333 Pfam Major intrinsic protein 79 314 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 SUPERFAMILY Aquaporin-like 78 319 IPR023271 -
Lele11g1178 333 FunFam Probable aquaporin PIP1-2 72 333 - -
Lele11g1178 333 CDD MIP 87 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PRINTS Major intrinsic protein family signature 135 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PRINTS Major intrinsic protein family signature 257 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PRINTS Major intrinsic protein family signature 221 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PRINTS Major intrinsic protein family signature 172 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PRINTS Major intrinsic protein family signature 297 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 56 322 IPR034294 -
Lele11g1178 333 TIGRFAM MIP: MIP family channel proteins 91 313 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele11g1178 333 Gene3D Glycerol uptake facilitator protein. 72 333 IPR023271 -
Lele11g1178 333 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1178 Lele-ChrLele11 18992465 18994899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1178 41 333 Major Intrinsic Protein MIP AT2G37170 77.288 7.62e-167 466