Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1175 ATGGCTTCTTTACTTTCGCTTTTGCTTTTCTCGGCTACTTCAATCATTTTGTCCTGGCTTACTTATGGTGCATCTTTTGAAGAAGAGTCATCATCATATATCTCAGTAGTAGGAATTTCTCACAGAAAACAATCCTATTTCTGCAAGTCAGCAACCGTTTCTAATGATGAGACAGGAGTCTACAAGAATCTCTTGCAGGAAATTGCACAGAGGGTTGGGGCTCCATTGCCTCAATATACAACATTTAGGTCAGGATTAGGACATTTCCCTGTTTTTGCTGGAACTGTAGAACTTGCTGGAATAAAATTTACAGGTGAACCTGCCAATAATAAGAAACAAGCAGAGAAAAATGCTGCAATGGCGGCTTGGTCATCTCTAAAACAGTTGGCTAGAGAAACTGCCAGCTCCTCTTCTGAACCTGAGAATAGTGATGAACTAGAACAGATCACAATTGCAAGGGCCTTACTAAACTACCGTTTGTCAAATCCTAATTCTCCAATTACATTTCCAAGGAAGTTTCAGATTCAAAATCACAGGCCAACCAAAGCCCAACCTCCACCGGCTACTACATCGAAGATTCTTCCTTTGATTTGCCTGAAGAGAGCACATCGAAACAGGCATGGGTTGACAATGATGAATGGAAATCCTAAAAGCAGGCCTCCCCTTGCAGCAGCAGCAGCCAATGACGATTCCATGGCACCACCACAGTTATCCACATCAGAAAACCGAGGTTCCCGACCCTTGAAGTTCCCTGCAGTGGGTGCAGCACCTTATGTTCCCATACGACAGATGATATCACCTTGCCAGAGTATTGCCCCTCCGGTGTCTATAAGGACCGTAGTCCCTGTATTTGCTGCACCGCCACTTCCTCCACCAGCTGCACAGTACCATCAAGGGATGCAGCCCCTTCACGAACAAGCTGCACCTACCGTCAATATTAGGCAGGCTGTTCCAGTATATGCTGCTCCACCAGTTCCAAAAGATGGACATGGCGCCATCCAGAAGAAAGATTTACAAACTCCAGTTGAAATTGGAAAGAAAGATAGAGAGTCAGAACATGAGACAGTGCAGACCTTGAAGCAGTTGACAATCTGA 1095 0.4484 MASLLSLLLFSATSIILSWLTYGASFEEESSSYISVVGISHRKQSYFCKSATVSNDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHFPVFAGTVELAGIKFTGEPANNKKQAEKNAAMAAWSSLKQLARETASSSSEPENSDELEQITIARALLNYRLSNPNSPITFPRKFQIQNHRPTKAQPPPATTSKILPLICLKRAHRNRHGLTMMNGNPKSRPPLAAAAANDDSMAPPQLSTSENRGSRPLKFPAVGAAPYVPIRQMISPCQSIAPPVSIRTVVPVFAAPPLPPPAAQYHQGMQPLHEQAAPTVNIRQAVPVYAAPPVPKDGHGAIQKKDLQTPVEIGKKDRESEHETVQTLKQLTI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1175 364 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 60 128 IPR014720 -
Lele11g1175 364 MobiDBLite consensus disorder prediction 324 364 - -
Lele11g1175 364 SMART DRBM_3 61 127 IPR014720 -
Lele11g1175 364 MobiDBLite consensus disorder prediction 330 356 - -
Lele11g1175 364 MobiDBLite consensus disorder prediction 210 248 - -
Lele11g1175 364 PANTHER - 55 324 - -
Lele11g1175 364 FunFam Double-stranded RNA-binding protein 2 57 128 - -
Lele11g1175 364 Pfam Double-stranded RNA binding motif 61 126 IPR014720 -
Lele11g1175 364 Gene3D - 54 128 - -
Lele11g1175 364 CDD DSRM_AtDRB-like_rpt2 59 127 IPR044451 GO:0003725
Lele11g1175 364 SUPERFAMILY dsRNA-binding domain-like 60 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1175 Lele-ChrLele11 18973394 18975866 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1172 09 20795677 20798433 Lele11g1175 11 18973394 18975866 hybridization
Lele10g1150 10 22775939 22776933 Lele11g1175 11 18973394 18975866 hybridization