Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1172 ATGAAGGAAGTCGAGAAGAGCTTGGATCCGCAACTCTGGCACGCGTGCGCCGGAGGTATGGTTCAAATGCCTCCGGTGAACTCCAAAGTCTTTTACTTTCCTCAAGGACACGCCGAGCACGCTCAGGCCAACCTTAATTTCCCCCCTTCCTTAAGGATTTCTCCTCTTATTCTTTGTCGCGTGGTATCGGTGAAATTCTTGGCCGACCCAGAAACTGATGAAGTTTTTGCCAAGATAAGGTTGGTTCCTGTGAGAAATTCCGAGCTCGATTACAACGACGACGACGACAGGGTTACGGACGTTAATGGATCGGAAAATTCAGAAAAATTGGCATCTTTTGCCAAGACATTAACCCAATCTGATGCGAACAATGGTGGGGGCTTCTCTGTTCCAAGGTACTGCGCAGAAACTATCTTCCCACGGCTGGATTACACAGCCGAACCACCCGTTCAAACCGTTGCTGCCAAGGACGTTCATGGCGAAACCTGGAAATTCAGACATATATACAGGGGAACACCTCGTCGGCACTTACTAACCACTGGGTGGAGCACTTTCGTGAACCAAAAGAAACTCGTTGCTGGGGATTCTATTGTTTTCTTGAGGGCTGAAAACGGTGAACTCTGTGTCGGAATTCGCCGAGCAAAACGTGGCGGTTTTGGCAGCAGGATGCAAACACCATCAGCCGGCTGGAGCGGTGTTGCCGGCGGAACTGGTGTGGGGCCTTGTGGGGGCTTCTCTTATTTCTTGAGAGAGGACTACAGATTACTGCCTAATGCTTCTGGGAATTCAAGCCCTGTAAGAGCAAAAGTGAGGCCTGAATCTGTGATGGAAGCTATGACACTGGCTGCTAGTGTTCAGGCATTTGAAGTAGTTTATTATCCTCGAGCTAGCACTCCAGAGTTTTGTATTAAAGCTTCATCTGTGAAGGCTGCAATGAGAACTCAATGGTGCTGTGGCATGAGGTTCAAGATGCCCTTTGAGACCGAGGATTCTTCTAGAATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTCGATCCCGTTCGTTGGCCCAACTCACCCTGGCGACTTCTTCAGGTTACTTGGGATGAACCAGATCTGCTGCAGAATGTGAAGCGTGTTAGCCCATGGTTGGTAGAATTGGTATCAAACATGCCGGTCGTTCATTTCATGCCTTTTTCTACGCCGAGGAAGAAGCTGCGGCTTCCACAGCACTCGGACTTCCCCCTTGACGGTCAATTTCCGATACCGACGTTTTCAGGCAACCCCCTTGGGCTGAGTAGCCCCTCGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTTTCAGATCTCCACCTTAACAATAATAAACTACAGTTGGGGTTGCTTCCAACTAACATCCAGCAGCTTGATATACATCCTGGGATATCCAATGGCAAGATGGCAAACAACGGCGAGAACAATGAAAGCTTGTCTTGCTTGCTAACCATGGGAAATTCTTGCAAGAGCTTGGAGAAATCTGATAATGTGAAGAGACACCGGTTCTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTCGAAGCTGTTCTAGCGATAAGTTGTCTCAGAATGTTACAGAAAAAGATTTGCCAGATGAAAATAGAGACAAGACAAAGTTCAAATTGGGTGATTCACAATCTGGTCTTTCTCAGCAGTTTTCACCTGGGAAATCTTCTAATAATGTTGAGTATTCTTGGCAACTAGGCTTAGATAACGGTCATTGCAAGGTTTTTATGGAATCCGAGGACGTGGGACGAACTCTTGACCTATCTTGTCTCGGTTCTTATGAAGAACTCTACAGAAGACTGGCCAACATGTTTGGAATTGAAAGATCTACAATGTTGCGCCATGTAATCTACTATGATGCATCTGGTGCTGTTAAGCAAACTGGACTAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTAACAATTCTGACCGATTCAGGCAGCAAAGAGTTTTAA 2040 0.4662 MKEVEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQANLNFPPSLRISPLILCRVVSVKFLADPETDEVFAKIRLVPVRNSELDYNDDDDRVTDVNGSENSEKLASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVAAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGELCVGIRRAKRGGFGSRMQTPSAGWSGVAGGTGVGPCGGFSYFLREDYRLLPNASGNSSPVRAKVRPESVMEAMTLAASVQAFEVVYYPRASTPEFCIKASSVKAAMRTQWCCGMRFKMPFETEDSSRISWFMGTIASVQVVDPVRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVVHFMPFSTPRKKLRLPQHSDFPLDGQFPIPTFSGNPLGLSSPSCCLSDNAPAGIQGARHAQFGISLSDLHLNNNKLQLGLLPTNIQQLDIHPGISNGKMANNGENNESLSCLLTMGNSCKSLEKSDNVKRHRFLLFGQPILTEQQISRSCSSDKLSQNVTEKDLPDENRDKTKFKLGDSQSGLSQQFSPGKSSNNVEYSWQLGLDNGHCKVFMESEDVGRTLDLSCLGSYEELYRRLANMFGIERSTMLRHVIYYDASGAVKQTGLEPFSDFMKTAKRLTILTDSGSKEF 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1172 679 MobiDBLite consensus disorder prediction 566 582 - -
Lele11g1172 679 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele11g1172 679 MobiDBLite consensus disorder prediction 548 565 - -
Lele11g1172 679 Gene3D - 594 679 - -
Lele11g1172 679 FunFam Auxin response factor 316 389 - -
Lele11g1172 679 FunFam Auxin response factor 111 215 - -
Lele11g1172 679 SMART B3_2 113 215 IPR003340 GO:0003677
Lele11g1172 679 CDD B3_DNA 112 213 IPR003340 GO:0003677
Lele11g1172 679 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele11g1172 679 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Lele11g1172 679 MobiDBLite consensus disorder prediction 541 582 - -
Lele11g1172 679 Gene3D - 110 215 IPR015300 -
Lele11g1172 679 Gene3D - 316 389 - -
Lele11g1172 679 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Lele11g1172 679 ProSiteProfiles PB1 domain profile. 595 675 IPR000270 GO:0005515
Lele11g1172 679 SUPERFAMILY DNA-binding pseudobarrel domain 106 214 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1172 Lele-ChrLele11 18953207 18955888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1172 4 677 B3 DNA Binding Superfamily AT4G30080 57.826 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele11g1172 B3 4.9e-22 CL0405