Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1164 ATGAAGCAGCAGGGGCAGTTTCGCCTTCGAAGAGAAAGAAACCTTCAAAATTGGTTTATATTCAATTGGAAGATGCAGCAACATTCGTTCCATCTCAGCAAAACTGCTTCTACTTTTCTTCTATCGTCTCCCAAATGGAGAAAAGTGAAGCTTGCTCTTGGAATGAATATGTGTGTTTATGTTCCTAGAGCTTTGGATGATCCCTCTTCTTCCCTCAACTCCGCCGCCAGACTTTCTGATGCTCACTCCCGCTCTAGTGTTTTACCGGCCGATCATAGCTCCGGTTACTGCCCATTGACCCCGACGCCGTCTTCCTCCGGTCTCCGACTTCCCAGAAACGGAACCAAATCTCCCAAGCTGCTTTTGCTTTGCTTTTCGACTGGGGCATCGCTGTGGGCTTATCAGATTGTGACGTATCTGACTATTGCGGGAACGATGATTACTATTCCTCGCGTTGGGACATGCGCAATATGCCTAACCGCGCTGAAACCAGGGCTGGGGCACGCCATTTTTACTGCAGAATGCTCTCACTCTTTCCACTTCCATTGCATTACATCTAACGTAAAACATGGAAACCGGATTTGTCCCGTCTGCAGAGCAAAATGGAAAGAAGTGCCTTTTCAGGGTGCTGCTTCTAATGTTTCTGAAGGATTGTCTCGAATCAACCCACCACCAACTTTCCCACCAGGACAAGGTAGTGACTGGACAACTGTCTTCCGCCGGCTTCCTACCCCACAAGCTGGTGCAGGTCGTCAGAGTTCATCTCTTTATCATGTTCCTGAACCTGCCATCTTTAATGATGATGATGCTTTGGATCAACAAACTCCAAGTAATCCTTATAAAGATCGGGAGGATTCATTAGATGCGATGGAAATCAGAACATATCCTGAAATTTCAGCCGTTCCAAAATCAATTTCTCGTGATAATTTTGCTGTATTAATCCATCTCAAAGCTCCTCATTCTGGGAGACGGCAGAATAATGGTGAAAACAATGCAAAAACGTCACCTTTGGATCAAAATTCTCGTGCTCCAGTGGACCTTGTCACAGTTCTTGATATAAGCGGTAGTATGGTAGGCACCAAGCTTGCATTACTAAAACGAGCCATGGGTTTTGTCATACAGCATCTAGGTCCAGCAGACCGACTTTCTGTCGTTGCCTTCTCATCAACAGCCCGCCGCATCTTTCCTCTCCGGCGCATGACTGATACTGGACGGCAGGAGGCATTGCAGGCTGTTAATTCTTTGGTATCAAATGGTGGGACAAACATTGCAGAGGGCTTGAAGAAAGGTTTGAAGGTTTTTATTGACCGTCAATGGAAGAACCCAGTTGGTAGTATCATATTACTATCTGATGGGCAGGATACATACACCGTCAATAGCAGCAGAATCCATGTTGCAAGAGATTACCAGTCACTTGTTCCAAATTCTATTGAACGCAACAAAGGGGTGGGATTGCAAATACCAGTGCATGCTTTTGGCTTTGGTGCTGACCATGATGCTACTTCCATGCACTCAATTTCTGAGGTGGAAATAATCTGTGTTCATCCCCAACTGCAACTTAGTTCAGTAAAAGCAGGAAGCTACAGGACCAGCATGATGGCCAATTCAAGAAAGGCTTCTATAGAAGTAGGAGATTTATATGCTGATGAAGAAAGAGACTTTTTGGTGACAGTCAACGTTCCAGTTGATGGATCCAGTAAGGAGATGTCATTGGTGATCGTTAAAAGTCTCTATAGACACCCAATCACAAAAGAAATGGTGTCCTTGAAAGACAGCAGTGAAGTAAAAATCCAGAGACCTGAAATAGCTAGAGAGGCAACCGTCTCAATAGAAGTAGACCGGCAACGAAACAGGTTGCTTTCTGCGGAAGCAATGGCTGATGCTAGAGTTGCAGCTGAACGTGGTGATTTGGCTGCTGCAGTTTCAATCCTGGATAGCCGTCACAAGGCATTATCTGAGACCATGTCTGCTCGAGCCGGCGACCGGCTATGCGTTGCTCTTGCTGCCGAATTAAAGGAGATGCAAGAGAGGATGGCGAACCAACGTGTGTATGAGCAATCTGGAAGGGCTTATGTTCTGTCAGGATTGAGTTCACATTCATGGCAAAGGGCTACAACAAGAGGTGATTCCAGAGATAGTAGCAGCCTTGTGCAAGCATACCAAACACCGTCCATCTTGGACATGGTACGCAATACTACGTCGTCTTCCTCAACAAGTGCCATTCTTGTTCCTCTTTGTAGGCATTTTCAAGAATCACCGCTAACAGTCTCCGAGCTGACGCTCATATTAACTTCCACACTCAAAACATCTTCGACACATAAAGCATATAAGCTTCTGATTCTGAAGACTGCGAAGGCTTACCAATTGATTGACACCTACAATTTTTATTACGGCCTATACAATGGCGCTGTAAAAGTCTACCAAGGAAACTTAAAAAAACATAATTTCTCCCCATTCTGTGATGCCAAAGAGAGTGCATACTTATGGACATGCTTGTGTGATCCCAATGGGTTTCCTAATGTGGAAGCAGATGGCAATAGTTCGAATTGCTTTACTGTGTGCAACTGCACCTGGGGAGCTCTCACCATCTCACAAGGTTCAAAGAAACACATTTCCAGCAAGATTGTTATGATTATACTATTACTATGTGTTATATGTACAACTGGTGCATTTCTTGCCTCAATCCTATGCTATATTGAACTACTATCTAGACTTCATCATTGTCACCTGGAGCCTTTGCTTGGACACTGCATAGAATCAAAAGGAAAACATGTTGAGAGGTTACTTGTATTTAAGTACATGGTTAATGGTAATTTGAGGGACGGTTTGGATGGAGTTTCTGGAAAAAGTCTGGATTGGGCTACCCGTGTTACGATTGCAATAGGAGCTGCAAGGGGATTGGAATACCTACATGAAGCGGCTGCTCCAAGAATTCTGCATAGAGATATTACCGATCTTGGTATGGCTAAAAACTTAAGAGCTGATGGCTTCCCCAGCTGTTCAAATTCTCCAGCTAGAATGCAGGGCACATTTGGTTATTTTGCACCTGAGTATGCATTTGTTGGAAGAGCCTCTCTTAAGTCAGACATCTTCAATTTTGGGGTGGTTCTTCTTGAGATTATCAGTGGTCGTCAACCTGTCTAG 3144 0.4453 MKQQGQFRLRRERNLQNWFIFNWKMQQHSFHLSKTASTFLLSSPKWRKVKLALGMNMCVYVPRALDDPSSSLNSAARLSDAHSRSSVLPADHSSGYCPLTPTPSSSGLRLPRNGTKSPKLLLLCFSTGASLWAYQIVTYLTIAGTMITIPRVGTCAICLTALKPGLGHAIFTAECSHSFHFHCITSNVKHGNRICPVCRAKWKEVPFQGAASNVSEGLSRINPPPTFPPGQGSDWTTVFRRLPTPQAGAGRQSSSLYHVPEPAIFNDDDALDQQTPSNPYKDREDSLDAMEIRTYPEISAVPKSISRDNFAVLIHLKAPHSGRRQNNGENNAKTSPLDQNSRAPVDLVTVLDISGSMVGTKLALLKRAMGFVIQHLGPADRLSVVAFSSTARRIFPLRRMTDTGRQEALQAVNSLVSNGGTNIAEGLKKGLKVFIDRQWKNPVGSIILLSDGQDTYTVNSSRIHVARDYQSLVPNSIERNKGVGLQIPVHAFGFGADHDATSMHSISEVEIICVHPQLQLSSVKAGSYRTSMMANSRKASIEVGDLYADEERDFLVTVNVPVDGSSKEMSLVIVKSLYRHPITKEMVSLKDSSEVKIQRPEIAREATVSIEVDRQRNRLLSAEAMADARVAAERGDLAAAVSILDSRHKALSETMSARAGDRLCVALAAELKEMQERMANQRVYEQSGRAYVLSGLSSHSWQRATTRGDSRDSSSLVQAYQTPSILDMVRNTTSSSSTSAILVPLCRHFQESPLTVSELTLILTSTLKTSSTHKAYKLLILKTAKAYQLIDTYNFYYGLYNGAVKVYQGNLKKHNFSPFCDAKESAYLWTCLCDPNGFPNVEADGNSSNCFTVCNCTWGALTISQGSKKHISSKIVMIILLLCVICTTGAFLASILCYIELLSRLHHCHLEPLLGHCIESKGKHVERLLVFKYMVNGNLRDGLDGVSGKSLDWATRVTIAIGAARGLEYLHEAAAPRILHRDITDLGMAKNLRADGFPSCSNSPARMQGTFGYFAPEYAFVGRASLKSDIFNFGVVLLEIISGRQPV 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1164 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 211 IPR013083 -
Lele11g1164 1047 MobiDBLite consensus disorder prediction 320 340 - -
Lele11g1164 1047 SUPERFAMILY RING/U-box 154 205 - -
Lele11g1164 1047 ProSiteProfiles Zinc finger RING-type profile. 155 199 IPR001841 -
Lele11g1164 1047 CDD RING-H2 155 199 - -
Lele11g1164 1047 MobiDBLite consensus disorder prediction 216 237 - -
Lele11g1164 1047 Gene3D von Willebrand factor, type A domain 346 511 IPR036465 -
Lele11g1164 1047 Pfam VWA / Hh protein intein-like 661 730 IPR032838 -
Lele11g1164 1047 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 153 732 - -
Lele11g1164 1047 Pfam Protein tyrosine and serine/threonine kinase 898 1046 IPR001245 GO:0004672|GO:0006468
Lele11g1164 1047 Pfam von Willebrand factor type A domain 346 508 IPR002035 -
Lele11g1164 1047 SUPERFAMILY Protein kinase-like (PK-like) 899 1046 IPR011009 -
Lele11g1164 1047 ProSiteProfiles Protein kinase domain profile. 836 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1164 1047 SMART ring_2 155 198 IPR001841 -
Lele11g1164 1047 MobiDBLite consensus disorder prediction 323 340 - -
Lele11g1164 1047 SUPERFAMILY vWA-like 342 508 IPR036465 -
Lele11g1164 1047 Pfam Ring finger domain 154 199 IPR001841 -
Lele11g1164 1047 Gene3D Transferase(Phosphotransferase) domain 1 886 1047 - -
Lele11g1164 1047 ProSiteProfiles VWFA domain profile. 346 507 IPR002035 -
Lele11g1164 1047 SMART VWA_4 344 538 IPR002035 -
Lele11g1164 1047 SMART tyrkin_6 879 1047 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1164 Lele-ChrLele11 18889320 18899357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1164 789 899 Receptor kinase-like Gene Family AT2G28250 37.391 6.10e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Lele11g1164 VWA 6.5e-23 CL0128