Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1161 ATGAGCAGTTTAAGGCCAGAATCGCATGTAGCACAGCAGCTTCGGCGTGATAAGTTGAGAATCCAGAATAGTTCCCAGCATTTACAAGATTTCCCGACTAATATTGAACAATTGTCACTACACCCAGGCTTCAACTCTGATTTTCTGCAAGTTCGGAATGTCAGAAATGCAAACATGCTTTACGAACCAGCTTTTTATTCAACGGAAATCGCCAGTTTTTCACCACCTTCGAATACTTTATCTGCTGCAGGCGATGTTAAACCTAATAGACTAATGTTGCCTCAGTACGCTTCCTTCCCCTATTCATCTGTATCGGAACCACCAGCACCGTCTTCCGCCGCCGATCAACCCCGAGATAATTACTTGGGTTATGATTGGATTATTAGTTATGGAAGTAGTTCCGGGGTTAATGAAACGAGCAATCCCAACTCTAATTTTGCAACTGATCAGCTGAATAGTAACAACGTGTCCGTGTATCAGCACTTGGCGAAGCCTAGTTACAACGAACTCATCGGAAGGCAGTTAGGGGAAATGCATCATCCTTCTTCCCCACCACCTCCACTTTTTCAGAATTCTTTGCACGATATGGTCAAGTCTGCTTCTATCAGTGCCCAAGGATCTGATCATTTAGTTTCGCAGATGCAGCATCATCATCCTGGCCATGGGATCTGGATGGGAAATCAAAATCAATCAAATCAATTTCATCATTTCGGAAATACTAATAATTTGAGCGATCCCATAAATCCTCAAGGATTATCTTTATCACTTTCATCAAATTCCCATTCCAAGGCTTCTCTTTCTGGGTTCCCATCTAGTGAAGGACATGGTGGAACAGACGAACTTAACTCACCACGATGTGATAAATCTGGGAAATCTCTTGTGAAGACTTCCTCCTTATTAGTTACTAAAGATTATGGAAAATCACTCCAAGAAGTCGTGGGAGTTTCTTCGAGCACAGGTGCTTATCGAAGTAATGTAGGCCCGCTTGGGCCTTTCACTGGATATGCAACCATTTTAAAGAGTTCGAGGTTCTTGAAGCCAGCTCAAGAGTTGTTGGATGAATTCTGTAAGGTGTGTGGATCTAACATTATCAAAGCACATGATGGTTCAGATTTCTCGAAGGTGTCTGGAGAAGGAAGTGCCGCTTCTTCTGCAGCTGAAGTGAGTGTTAGTAATCCAGGTGCAGCTTCGTGTTCTATGTTGTATAATTCCAAGGAAAATAGCGGTGATTGTGAATCAAAAGGAAACTTTAATTGTTCTTCTCGGTCGGTATATCAGCAAAAAAAGGCGCAGCTTCAGTATATGCAAGAGGAGGTTACGAGAAAATACAGGCAATATCACCAGCAAATGCAAATGGTGGTTTCATCTTTTGAGTCTGTAGCAGCTCTTAGTTCGGCTACGCCTTATATCACTATGGCTCTTAAGTCAGTGGCAAGACACTTCAGGGGCCTGAGAAATGCAATGTTGGATCAAATCAAGCATTTAAGAGAGATGTTGGGGGAGGATTTATCAGGATCCACGTCTGGTACAATGAGTAAACTTGACGCAGGCCTAACTTATCTGGAGCAAAGCTTTCATCAGAAGAACAAAACTTCATTTCTTGAACCTCAACAAGTATGGAGGCCACAAAGAGGCTTGCCAGAACGTGCAGTCGCCACTCTTAAAGCTTGGTTATTTGAGCATTTCCTTCACCCGTACCCCACGGATACTGATAAACACATGCTGGCTACACAAACGGGTTTATCTCGTAACCAGGTGTCGAACTGGTTCATCAATGCTCGAGTCCGTGTGTGGAAGCCAATGGTTGAGGAAATACACAATCTTGAAACAAGAGGCATGGCCGGCGGCGGCAATCAGAACGAGGGAACATGTGGTCATGCAGAAGGAAGCAATCAACAAGAAGCAGCAATGGTTGAAGAACCTCCTCTTGGCAAGTTTGGTATAAGGCATGGGGATGTAATTCCGGAGAGGCAATTCCAGTGTTTGAGAATGAGTTCGGAGGGAGTGGGATTTATGAGTTCATCTGAGGAATGGAATCAAGAGAAGAGGTCGAAAATGGAATGTCAGATGACGACGGCGGCGGCAGACATGGATGGGACATTAATGGGTTTTGTACCCTACAGGCGTGGTGGTGGAGGCCTCGATGTGGGGGGACTAGGGTCTGTGTCATTAACGTTGGGTCTTAGACATGGGGTTGAAGGCGCACGACACCACCACCACCAGCAACAACAATTGCAACAACACCAGGAGGATCAGATTAGACGTCACTTTGGAGAGCATATGATCCATGACTTTGTGGGTTAG 2304 0.4457 MSSLRPESHVAQQLRRDKLRIQNSSQHLQDFPTNIEQLSLHPGFNSDFLQVRNVRNANMLYEPAFYSTEIASFSPPSNTLSAAGDVKPNRLMLPQYASFPYSSVSEPPAPSSAADQPRDNYLGYDWIISYGSSSGVNETSNPNSNFATDQLNSNNVSVYQHLAKPSYNELIGRQLGEMHHPSSPPPPLFQNSLHDMVKSASISAQGSDHLVSQMQHHHPGHGIWMGNQNQSNQFHHFGNTNNLSDPINPQGLSLSLSSNSHSKASLSGFPSSEGHGGTDELNSPRCDKSGKSLVKTSSLLVTKDYGKSLQEVVGVSSSTGAYRSNVGPLGPFTGYATILKSSRFLKPAQELLDEFCKVCGSNIIKAHDGSDFSKVSGEGSAASSAAEVSVSNPGAASCSMLYNSKENSGDCESKGNFNCSSRSVYQQKKAQLQYMQEEVTRKYRQYHQQMQMVVSSFESVAALSSATPYITMALKSVARHFRGLRNAMLDQIKHLREMLGEDLSGSTSGTMSKLDAGLTYLEQSFHQKNKTSFLEPQQVWRPQRGLPERAVATLKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHNLETRGMAGGGNQNEGTCGHAEGSNQQEAAMVEEPPLGKFGIRHGDVIPERQFQCLRMSSEGVGFMSSSEEWNQEKRSKMECQMTTAAADMDGTLMGFVPYRRGGGGLDVGGLGSVSLTLGLRHGVEGARHHHHQQQQLQQHQEDQIRRHFGEHMIHDFVG 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1161 767 MobiDBLite consensus disorder prediction 228 278 - -
Lele11g1161 767 SMART HOX_1 540 604 IPR001356 GO:0003677
Lele11g1161 767 FunFam BEL1-like homeodomain protein 9 543 605 - -
Lele11g1161 767 ProSiteProfiles 'Homeobox' domain profile. 537 600 IPR001356 GO:0003677
Lele11g1161 767 CDD homeodomain 540 601 IPR001356 GO:0003677
Lele11g1161 767 MobiDBLite consensus disorder prediction 228 289 - -
Lele11g1161 767 Pfam Homeobox KN domain 557 596 IPR008422 GO:0003677|GO:0006355
Lele11g1161 767 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 217 626 - -
Lele11g1161 767 Pfam Associated with HOX 338 488 IPR006563 -
Lele11g1161 767 MobiDBLite consensus disorder prediction 612 633 - -
Lele11g1161 767 SUPERFAMILY Homeodomain-like 542 608 IPR009057 -
Lele11g1161 767 MobiDBLite consensus disorder prediction 613 630 - -
Lele11g1161 767 Gene3D - 543 605 - -
Lele11g1161 767 SMART prehox3 333 490 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1161 Lele-ChrLele11 18865728 18870590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1161 339 609 Homeobox Transcription Factor Family AT4G34610 46.494 3.10e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele11g1161 POX 3.3e-37 No_clan