Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1148 ATGGAAGCGAATCTACGAAGTAGAAGCAGATTTGGCGAATTTGAATGGGAGAAGGCAGTGACCGAATATGGAGGAAGACGATGGCGTTTAGTTGGGAAAAGGATATTTTGGTCAGAAAAATTTCAATACCAAACACAAATTGCAACACCAAAGGGTGCTTTTCCAAGGATGGTGTCGGACGCGAGTAAGAAGAAGGCAGCGCAGAAGAAGGCCGCCGCCGCCGCTAAGAGAGGAGGGAAGGCCGCCGCTGCGGCCGCTTCCTCAAAGGCGGCGGCATCGGAGGCTCAGAAGGCTGCCGATAAGCTTGCCAATGGAGTTGGTGAAATCCAGATATCCGATCGTACGTGTACTGGCGTCCTCTGTTCACATCCTCTTTCGAGGGATATTCGGATAGAGTCTCTATCAGTTACTTTTCATGGGCATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGCTATGGTCTACTTGGATTAAATGGTTGTGGAAAATCTACTCTCCTTACGGCATTAGGTTGTCGAGAGCTTCCAATTCCTGATCACATGGATATTTATCACCTTACTCGAGAAATTGAAGCTTCTGACATGTCTTCATTGGAGGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTAGAGAAAGAAGCTGAAATTTTGGCAGCACAGGATGATGGAGGTGGCGAAAGTCTTGAACGTGTTTACGAACGATTGGAAGCTCTGGATGCGTCTACTGCGGAAAAGCGTGCTGCTGAAATTTTATATGGCCTGGGTTTTAACAAGCAGATGCAAGCTAAGAAGACGCGTGATTTTTCTGGTGGTTGGAGAATGAGGATAGCTTTAGCACGTGCTCTATTTATGAACCCAACCATTCTTTTACTTGATGAACCAACTAATCATCTAGATCTTGAAGCATGTGTATGGCTGGAGGAAAATTTGAAAAAGTTTGACCGCATTCTGGTTGTTGTTTCACATTCTCAAGATTTTCTCAATGGTGTTTGCACAAACATCATCCACATGCAAAATAGAAAGCTAAAGCTTTACACTGGTAACTATGATCAATATGTTCAGACGCGTTCTGAATTGGAAGAAAACCAGATGAAGCAGTACAGGTGGGAACAGGAGCAGATTGCTTCAATGAAGGAATATATTGCTCGATTTGGGCATGGATCTGCTAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACTGAGAAGGTTGTCAGAGACAAAGTCTTGGTATTCCGCTTTGTTGATGTGGGAAAGCTTCCCCCACCTGTGCTTCAGTTTGTTGAGGTGACTTTTGGTTACACCCCAGATAATCTCATCTACAAAAACCTCGACTTTGGGGTGGACTTAGATTCTAGGGTTGCACTTGTTGGACCCAATGGAGCTGGGAAGAGTACGCTGCTTAAGCTAATGACTGGGGATCTGGTTCCTACTGATGGCATGGTTCGCCGACATAACCATCTTCGTATAGCACAATTTCATCAGCACTTGGCTGAAAAGCTAGACATGGAAATGTCTGCCCTTCAATATATGATAAAAGAGTACCCTGGAAACGAGGAAGAGAAAATGAGGGCAGCTATTGGGAAGTTTGGACTGTCAGGGAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAGAGGAGCCGGGTAATTTTTGCTTGGTTAGCTTGGAGGCAGCCTCACATGCTGCTTCTGGATGAACCAACTAACCATTTGGATATTGAGACTATTGACTCTTTGGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGTCACGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCAGATCAAGCTGTGACCAGATGGGAGGGCGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCTGGTTTATCTGACTGA 1968 0.4507 MEANLRSRSRFGEFEWEKAVTEYGGRRWRLVGKRIFWSEKFQYQTQIATPKGAFPRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAASEAQKAADKLANGVGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTALGCRELPIPDHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLEALDASTAEKRAAEILYGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRSELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPTDGMVRRHNHLRIAQFHQHLAEKLDMEMSALQYMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKEHLRAKAGLSD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1148 655 FunFam ATP-binding cassette sub-family F member 3 400 654 - -
Lele11g1148 655 SMART AAA_5 465 653 IPR003593 -
Lele11g1148 655 SMART AAA_5 153 355 IPR003593 -
Lele11g1148 655 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 70 650 - -
Lele11g1148 655 ProSitePatterns ABC transporters family signature. 273 287 IPR017871 GO:0005524|GO:0016887
Lele11g1148 655 Pfam ABC transporter 340 416 IPR032781 -
Lele11g1148 655 FunFam Abc transporter f family member 1 129 393 - -
Lele11g1148 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 129 369 IPR003439 GO:0005524
Lele11g1148 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 440 655 IPR003439 GO:0005524
Lele11g1148 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 374 IPR027417 -
Lele11g1148 655 Pfam ABC transporter 147 301 IPR003439 GO:0005524
Lele11g1148 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 634 IPR027417 -
Lele11g1148 655 CDD ABCF_EF-3 440 631 - -
Lele11g1148 655 Gene3D - 409 653 IPR027417 -
Lele11g1148 655 Coils Coil 347 367 - -
Lele11g1148 655 Gene3D - 129 393 IPR027417 -
Lele11g1148 655 CDD ABCF_EF-3 129 346 - -
Lele11g1148 655 Pfam ABC transporter 456 587 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1148 Lele-ChrLele11 18753950 18758529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1148 149 327 Calmodulin-binding Proteins AT2G36910 25.926 6.92e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0272 29 1610927 1616641 Lele11g1148 11 18753950 18758529 CCT
Lele30g1142 30 14370301 14376052 Lele11g1148 11 18753950 18758529 CCT
Lele09g1145 09 20565693 20567824 Lele11g1148 11 18753950 18758529 hybridization
Lele10g1115 10 22526215 22531594 Lele11g1148 11 18753950 18758529 hybridization