Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1137 ATGGATGCTCATCACCAAGACCCTCTGATGCAAATGAATGACTTCCTGCTTCATGACTTCATCGACGACACCAATTTCGACCAGTTTATCAATTTGCTCCGTGGCGGCGAGAATGAACATTCATTCTGTAACTTTGATTCTGATCTTATCATCAATGGCTGCTTAGCTGATAGCAACCAGTTTCTTCCATTACCTGCTGCAAACCCGTTTGAGTCTAGTAATGCTGCTGTAAATGCTTATGATCCAAGCTCTACACGTACGCTTAGTTCCTTCTCATGTTTTGATGGAGAAGTGGAGGGAGGAGGAAGAGGAGAAGAAGAGAATGATTCTTCTGCAACAACAACCACCACCAATACTGAAAATACAACGTGTGCTGATAATGCCAAGCAGAAGTCCAACAAAACTGATCGCTCCAAGACTCTGATTTCTGAACGGAGGAGAAGAGGACGAATGAAGGAGAAGCTTTATGCATTACGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTAGCATATGTGCAGGAGATGCAAGAGAAAGCGAAGAAGCTGAAGGCTGAGGTTAAAGGACTTGAAGCATCTCTGCTAGCGTCTGAAAACGATCAAAGATCAGCTAAAATCCCCATGAAGGTTCAAAACCACATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGACATGTTTCAAGTGGAGGAAAGAGGGTTTTATATGAGATTGGTTTGTAATAAAGGAGAAGGAGTGGCTGCTTCCCTGTACAGGGCTCTTGAGTCCCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCTATTAACATTTACATTGAATGTGAAAGGTTGCGAGCCAGAAATAAACCAGCAAAATCTGAAGCTGTGGGTGGGGAGTGCTCTTCTAAACCAAGGCTTCGAATTTATTCCAACTTTCCATGCTTGA 975 0.4328 MDAHHQDPLMQMNDFLLHDFIDDTNFDQFINLLRGGENEHSFCNFDSDLIINGCLADSNQFLPLPAANPFESSNAAVNAYDPSSTRTLSSFSCFDGEVEGGGRGEEENDSSATTTTTNTENTTCADNAKQKSNKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQEMQEKAKKLKAEVKGLEASLLASENDQRSAKIPMKVQNHINYPICKKIMQMDMFQVEERGFYMRLVCNKGEGVAASLYRALESLAGFNVQNSNLATVSDRFLLTFTLNVKGCEPEINQQNLKLWVGSALLNQGFEFIPTFHA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1137 324 MobiDBLite consensus disorder prediction 130 146 - -
Lele11g1137 324 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 53 314 - -
Lele11g1137 324 SMART finulus 141 190 IPR011598 GO:0046983
Lele11g1137 324 Pfam Helix-loop-helix DNA-binding domain 142 185 IPR011598 GO:0046983
Lele11g1137 324 MobiDBLite consensus disorder prediction 107 129 - -
Lele11g1137 324 Coils Coil 181 208 - -
Lele11g1137 324 MobiDBLite consensus disorder prediction 97 146 - -
Lele11g1137 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 201 IPR036638 GO:0046983
Lele11g1137 324 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 131 201 - -
Lele11g1137 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Lele11g1137 324 Gene3D - 125 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1137 Lele-ChrLele11 18661328 18662962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1137 9 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.067 8.88e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele11g1137 HLH 3.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0294 29 1739717 1742903 Lele11g1137 11 18661328 18662962 CCT
Lele30g1121 30 14245188 14248647 Lele11g1137 11 18661328 18662962 CCT
Lele09g1135 09 20486156 20487804 Lele11g1137 11 18661328 18662962 hybridization
Lele10g1107 10 22453780 22455430 Lele11g1137 11 18661328 18662962 hybridization