Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1133 ATGGAAGGCCCGGAGGAATTGGAGTTTGTGGGGCCGCCGTCTGATAATCATGCCACCGCCGTCACGCACGTCTCCAAGGGAAAGCGTACCAAGAGGCACCGCCCCTTCTCGCCTTGTGCTGTCGTCGCGGCCATGACGTCTAGCTCATCGAGCGTCTCCGGGGAACATCTCAGCGCCGGTGGGGATTACGGTTCCATTTCGTCCACCACAACCACCACCACTCATAATAATTATGACGCGAGCACTGAGGAAGAGGAAGACATGGCCAACTGTTTAATTCTCTTGGCTCAGAGTGGAGATTCCCATAATCTCAAGCCCCGACCTCAATCTCAAGCCGCCAGAACAGAATTACCAGGAGGAAGCCGGAGATTCGCCGATATACCCACCGTCACCGCCTCCGGTGCTGCCAAAGTTGGTTTGTTTGTGTATGAGTGCAAAACGTGTAACCGAAGTTTTCGTTCGTTTCAAGCGTTGGGTGGACACAGGGCTAGCCACAAAAAGCCTAAGTTGACGTTAGAGGAGAAGAAACTGCCGCCGCCGCCGCCGAAACTTATCAACAGTTATGAGATTGAAGAAGTTTCGATAAAAAGCAGCCCTCAAATTTCTCTTCAATTTGGAAATCACATGAATGGGGTTGTATCAATCAAAAAGGCGAAGATTCATGAGTGTTCAATATGCGGGTCAGAATTCACGTCCGGGCAAGCATTGGGAGGCCACATGAGGAGGCATAGGGCATCCACAACAACCATGGGTGCGGCGCCTCAGGCGAGTTATGACGAAGTTTCCGGCAACACGAGGACGGTGGAGGATGCGGTGGAAGTGAAGCCAAAAGTTCTAGCGTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCATCATTATCAGCGGGATTCCAAGTTTGAGTTGACGGCAAATGAGAAACCATTGGTGCTGTCTGCTGCGTCTTTGGTGGGATGCCATTATTAG 966 0.5197 MEGPEELEFVGPPSDNHATAVTHVSKGKRTKRHRPFSPCAVVAAMTSSSSSVSGEHLSAGGDYGSISSTTTTTTHNNYDASTEEEEDMANCLILLAQSGDSHNLKPRPQSQAARTELPGGSRRFADIPTVTASGAAKVGLFVYECKTCNRSFRSFQALGGHRASHKKPKLTLEEKKLPPPPPKLINSYEIEEVSIKSSPQISLQFGNHMNGVVSIKKAKIHECSICGSEFTSGQALGGHMRRHRASTTTMGAAPQASYDEVSGNTRTVEDAVEVKPKVLALDLNLPAPEEDHHYQRDSKFELTANEKPLVLSAASLVGCHY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1133 321 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Lele11g1133 321 SMART c2h2final6 221 243 IPR013087 -
Lele11g1133 321 SMART c2h2final6 143 165 IPR013087 -
Lele11g1133 321 Pfam C2H2-type zinc finger 142 168 - -
Lele11g1133 321 Pfam C2H2-type zinc finger 221 245 - -
Lele11g1133 321 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Lele11g1133 321 MobiDBLite consensus disorder prediction 100 123 - -
Lele11g1133 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Lele11g1133 321 MobiDBLite consensus disorder prediction 1 34 - -
Lele11g1133 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Lele11g1133 321 MobiDBLite consensus disorder prediction 102 116 - -
Lele11g1133 321 Gene3D Classic Zinc Finger 141 243 - -
Lele11g1133 321 SUPERFAMILY beta-beta-alpha zinc fingers 142 243 IPR036236 -
Lele11g1133 321 PANTHER ZINC FINGER PROTEIN ZAT5 34 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1133 Lele-ChrLele11 18635990 18636955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1133 22 321 C2H2 Transcription Factor Family AT2G28200 43.492 1.98e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g1133 zf-C2H2_6 2.2e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1132 09 20456410 20457375 Lele11g1133 11 18635990 18636955 hybridization
Lele10g1104 10 22421241 22422239 Lele11g1133 11 18635990 18636955 hybridization