Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1131 ATGATTTCAAGGGCCATCACAACAGCGTCTGGTTTCCAAAATCTCTCTCATCAAGGCCTGCACAATATGTTTCCTGCTGCTGCTGATGATGATAATAATCTGATTGAATCAGCTCCTTCTCAATCAAGCTCCCTCACGTTCAATCTCTCTGTCCTAAAAGACAAGCTTACTCATTTGCAGAATCTCGCCGGTATTCTTATCTCCTCGGATCAGATCCTACCGGAATTAACATGTACAACGTTAGCCAGTATGAATTCTATAATCCAGGCGTTCATAGTCACTGCCTCTTCCATGATGCTCACGTGCCAAGACCTGGTCCTTAATTTCTCTCCGCCACCACCGCCACCACCACCAGGTACCCATCATTGTACTGAATCCAACTTTGGCAATTATACAACTAGTGTTACAAGTAACATAGCTCAACACAGAGGGCCGCAAGGCATCTTCTCTAATCCTGATGATCAAAGCTTGGACTGGTTCGGTGGTGAAAGCTATGATAATAATCTCAAGGATGGTGATCCGGGTGTTGGAATTATTAGTGAAACGAAAAGAGAATTGTGTCAAGGAGATGAAACCAATGCAGGAAAGAACGACGAGGACATAATTGAATTGGATGCTGCAGATTTGTTAGCCAAGTACACGCATTACTGTCAAATTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCTGCTTTGAGCAACCCGATGAAGAAGAATAGAGACAAAGAATGTTCGATGAGCACTACGTGTACCCCTAAGAAATACTCATGTCCACAAGAAGGATGTAGATGGAATCAGAAGCATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTATAAGAGAAGTCATTGTCCGAAGATGTACGTGTGCAAGAGATGCAATTTGAAGCAGTTCTCTGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGACATGTTGCTTTGTTCGTTGGCCATGCTCCAGCTGTCGGCGGCGGCTTCTCGTATTCTGGCAATTTGCAACTGCAGGAAGATGGTAGTTCAACAAGATGA 1155 0.439 MISRAITTASGFQNLSHQGLHNMFPAAADDDNNLIESAPSQSSSLTFNLSVLKDKLTHLQNLAGILISSDQILPELTCTTLASMNSIIQAFIVTASSMMLTCQDLVLNFSPPPPPPPPGTHHCTESNFGNYTTSVTSNIAQHRGPQGIFSNPDDQSLDWFGGESYDNNLKDGDPGVGIISETKRELCQGDETNAGKNDEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKKNRDKECSMSTTCTPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVGGGFSYSGNLQLQEDGSSTR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1131 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Lele11g1131 384 Pfam Zinc finger, C2H2 type 215 237 IPR013087 -
Lele11g1131 384 Gene3D Classic Zinc Finger 306 356 - -
Lele11g1131 384 FunFam Zinc finger protein 574 214 239 - -
Lele11g1131 384 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 364 IPR044300 GO:0010044|GO:0010447
Lele11g1131 384 Gene3D Classic Zinc Finger 211 239 - -
Lele11g1131 384 SUPERFAMILY beta-beta-alpha zinc fingers 213 240 IPR036236 -
Lele11g1131 384 SMART c2h2final6 270 303 IPR013087 -
Lele11g1131 384 SMART c2h2final6 215 237 IPR013087 -
Lele11g1131 384 SMART c2h2final6 308 330 IPR013087 -
Lele11g1131 384 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1131 Lele-ChrLele11 18624400 18625554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1131 42 365 C2H2 Transcription Factor Family AT5G22890 49.568 5.59e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g1131 zf-C2H2 9.9e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1131 11 18624400 18625554 Lele29g0299 29 1766924 1768693 CCT
Lele11g1131 11 18624400 18625554 Lele30g1117 30 14221899 14223667 CCT
Lele11g1131 11 18624400 18625554 Lele31g1253 31 18774527 18776291 CCT
Lele11g1131 11 18624400 18625554 Lele32g0277 32 1723107 1724876 CCT
Lele09g1130 09 20443037 20444239 Lele11g1131 11 18624400 18625554 hybridization
Lele10g1102 10 22406215 22407351 Lele11g1131 11 18624400 18625554 hybridization