LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g1126	ATGACTATTTCCGCACCTTTCGGGATGTGCATGCAACGTGTTTGCAGAAATGCCCCTCACAGAAGACAGAAGAACTCTCACTTGGAACTTCTGGATCCGTGTTCGTACAAGTTGAGTAGTCAGTATCCTGATTTGAATTCTGCGGGGTTTCCATTTTCCTATCTCTGGCGGGCTTTTGAGAAAGGTGAGAAAAATGTTTCTGTTATGGGTAAATTAGAAATGGCTATTGCTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCATTCTCAATCACCTAGGAGGCGAGGAGATGGAGGGAGTGGAAGCGCCCGATCTTCTTCAATCTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGTGGTGGGTCAAGTCCAAGGAAGACCTGGTGATGGATTACTTCAACAAAGGAGTGACGAGTTCATCGCTGACCTCTCACAGGCAAGTATGCCAGGTAGCCATGAGACAGGAGAGAGGCATGTGCTAGAAGATTCAATTTTGGGTGAGAATGATTGTGAAACATGGTCACATTCGCAAAGTCAGCATGAATCTCCTGATGATCAGGAGGAATTAAACAATTCTACTTGTGATAATTCTTCTGATCTTGGAGAAGTTGAAAGAGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAGAGTGGTACTGGGGATCCAGCCACAAACATTCCCCAAGGTAATAGCAATTCAAGATCAGAATGGCTCGGTGAAACCGAGCAGGAGAGAGTGAGAATCATAAGGGAGTGGGTACAATCGAGTAGCCAGCAGAGAGTTATTTCTTCTGGGGACAACAGGGAAGAACAATCAGCTGAATTTGGTACCCAAATGGAAAGAGTTCGTGATGGGCTTGTTGTTAATCAGAGCGAGGGTCAGACTGAGCATATGCGGAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGACAAAGAGAAGTTCAGGAATTATTGGACCATAGAGCTGTATCTCATTTCCCCCATCGCAACCGCATTCAGGCATTGCTCAGGGGTAGGTTCTTGAGAAATGACAGATCAATTGATGTTAACCGATCCATTTCCATAGCGGAAAGTGAATTAGGCTTATTGAGGCAAAAACAGACCGTATCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACAACGCTGGCGGCAATCAAGTAACTTGCACTCTATCAGATACCTCATCTAATAGTGGCATCGATAATAATTCAAATGAACAAGCTGACTCCAGCAGTTTACATTCGGTCTCAATTGTACATTTTGAACAGTCTGAACCTACCATAGGAGGTAGCGATGGAGTTGGAAATTTAGATGGTCAGAATTTTACACAAGAAACAATTATGGAAAATTTAGATTGTCAAGACTCCACTACTCAAATAGAAGGAAGGTCGTCACAGCTTTTGGAAAATGAGTCAAGAGATTGCCAATCGTCATCCAGTGTCGGGATGGAAAGAAGAGATGATACCAGGCTATATGTTGCTCGGATGACAGTTGAAGATACCACCGATAGACTTATGCAACAAAATTATCAGACTGAAGGTACAGAGCATAGCAATATGCAGGGTTCTAGTGAGGTATATCCTGAAGAATTCGAGCCAAGTGTTATAAGCAATGATGATAATGGTTCATCAACCCATAGTGATGTTATGGAATCCACTATAGTAGATAACGAAAATAGGTATGTATCTACTGCTCCGGAAGAGCAACAGCAGGAAGAACTCCTTGAAAATGAAGGAAGTGATGGGCACCTGAGAAATGGCACAGAGGAAAGTCCTGATGATAATCATCCGAGTGGTACAGCCAATGAATGGCCTCAAGACATTTTGGGCAATGAAGTTGTGGAAAACTCTCATCTACCCGAAGCCCCTGAAATTTGGCAAGAAGATGGTGGCTTTCAGGAGGCCGTGGAAAATTGGTTGGGTGGACCTTCTGATCATGAAGTTGCTCCAGTTGGTAGAATTCATGGCTTTTACTTTCCAGATGATGACAATGTGAACAGCGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTTTCTAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAAGTCATGCTCATGTTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTCAGTTGAACAGGACCTGGAGCAGCCCCGTAGGGATCAGATTGTTGGTCTGGAGGATACTATCATCAGTCCACTTGACCAACCCTCATCACCAACACCTCCTCAACCTCTCTGGGAAAGACATTCACGTCATGACAATTGGTCACGAGCTGACATGAATAATCAGCGGCTAGGAATTGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGGGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAGGAGGTTTCTGCAGCCCTAAATCGCTCAGCAAACCCATCAGATGTGCATGACCATGATTCACCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAGGGACTATGCTGTATATGCTGCGAGAGCAATATTGATTCTTTGTTGTACAGATGCGGCCACATGTGCACATGTTCAAAGTGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCGAGCGCCTGTATTGGAGGTGATACGCGCTTATTCCATACTATAA	2805	0.4417	MTISAPFGMCMQRVCRNAPHRRQKNSHLELLDPCSYKLSSQYPDLNSAGFPFSYLWRAFEKGEKNVSVMGKLEMAIAGLHNLSVLDSSFLRDSHSQSPRRRGDGGSGSARSSSILQMWREIEDEHVVGQVQGRPGDGLLQQRSDEFIADLSQASMPGSHETGERHVLEDSILGENDCETWSHSQSQHESPDDQEELNNSTCDNSSDLGEVERERVRQIFREWMKSGTGDPATNIPQGNSNSRSEWLGETEQERVRIIREWVQSSSQQRVISSGDNREEQSAEFGTQMERVRDGLVVNQSEGQTEHMRRGIRKLCGRQVLLDMLKKAERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSIDVNRSISIAESELGLLRQKQTVSGLREGFFSGKDNAGGNQVTCTLSDTSSNSGIDNNSNEQADSSSLHSVSIVHFEQSEPTIGGSDGVGNLDGQNFTQETIMENLDCQDSTTQIEGRSSQLLENESRDCQSSSSVGMERRDDTRLYVARMTVEDTTDRLMQQNYQTEGTEHSNMQGSSEVYPEEFEPSVISNDDNGSSTHSDVMESTIVDNENRYVSTAPEEQQQEELLENEGSDGHLRNGTEESPDDNHPSGTANEWPQDILGNEVVENSHLPEAPEIWQEDGGFQEAVENWLGGPSDHEVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQSHAHVEWELQETTPSSPSVEQDLEQPRRDQIVGLEDTIISPLDQPSSPTPPQPLWERHSRHDNWSRADMNNQRLGIGHSFSLEWEIINDLRIDMARLQQRMNNMQGMLEACMDMQLELQRSIRQEVSAALNRSANPSDVHDHDSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCRAPVLEVIRAYSIL	934

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	178	210	-	-
	Lele11g1126	934	Coils	Coil	316	343	-	-
	Lele11g1126	934	SUPERFAMILY	RING/U-box	881	927	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	480	505	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	480	500	-	-
	Lele11g1126	934	Coils	Coil	810	837	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	597	613	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	225	247	-	-
	Lele11g1126	934	Pfam	Zinc finger, C3HC4 type (RING finger)	879	926	-	-
	Lele11g1126	934	ProSiteProfiles	Zinc finger RING-type profile.	882	921	IPR001841	-
	Lele11g1126	934	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	528	934	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	585	626	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	533	569	-	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	92	112	-	-
	Lele11g1126	934	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	859	932	IPR013083	-
	Lele11g1126	934	MobiDBLite	consensus disorder prediction	229	245	-	-
	Lele11g1126	934	CDD	mRING-HC-C3HC5_NEU1	882	921	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g1126	Lele-ChrLele11	18581931	18589186	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g1126	882	928	C3H Transcription Factor Family	AT3G06140	42.553	1.03e-06	50.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele31g1251	31	18763435	18767060	Lele11g1126	11	18581931	18589186	CCT
	Lele30g1115	30	14206287	14208031	Lele11g1126	11	18581931	18589186	CCT
	Lele09g1125	09	20400650	20408186	Lele11g1126	11	18581931	18589186	hybridization
	Lele10g1094	10	22351578	22355246	Lele11g1126	11	18581931	18589186	hybridization