Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1118 ATGCCGGGGAGCTTGTGGTGTGTCTTGACATTGGTTGACTTGATCTATTTCTCAACTAGCAAGTTGTTTTCTCTTGTTATTACAGGGGATAAAAAACAAAACAAGGAGCCATTCTTCTCCTTAATTGCAATGGAACACCCCTTGTCAATTCAATGCCTTCTTCTTATCTCTTTCATATTTTCATCCTATTTGACTGCAACACAATCTTCGATAATTCCAAGGTTAAGCCCTGTTGGGGACATAACCTTACACGACTCTGCAGCCTTGATGACAGCAGAAGATACGGATACAGATACAGAGGAATTGAAAACGTTCTATTTCAAACAGACACTTGATCACTTCAACTATAGGCCAGATAGCTACACAACATTTCCACAAAGATATCTGATCAATTTCAACTACTGGGGTGGAGCCAATTCCAGTGCTCCCATATTTGCTTACCTTGGCGCAGAAGAACCCATAGATGATGACCTTAATGTTATTGGATTTCTTAATGATAACGCCCATTCCTTTAAGGCTCTCATAGTTTATATAGAGCACCGGTACTATGGGAAATCGGTGCCATTTGGATCCTTTGAAGCAGCATTGAAGAATGCAAAAACTAGAGGGTATTTCAACTCTGCTCAAGCTATTGCTGATTATGCAGCAGTCCTCATACATATAAAGAAGAAACTGAAGGCACAGGAGTCCCCTGTGATTGTTATTGGAGGATCATATGGTGGAATGCTTGCTTCATGGTTTAGACTCAAATATCCCCACGTGGCTCTTGGTGCACTTGCTTCATCAGCTCCAATTCTCTATTTTGATAACATCACACCATCAAATGGTTACCATTCTGTTGTCACAAGGGATTTTCGAGAAGCAAGTGAAACATGCTATGAAACTATCCTCAAGTCCTGGTCTGAAATTGACAGAGTAGCTTCAGAGACAGATGGCCTTTCCATCCTTAGTCAGAGATTCAACACTTGCCGTCCTCTGAACTCATCTTCTGAGTTGAAAGACTACCTAGAGACGATGTATAATACTGCAGCTCAATATAATCACCCACCAAGGTATCCAGTTACCGTGGTCTGTGGCGGCATTGATGGAGCCACTTTTGGAAGTGATATTCTCAGTAAGATATTTGCAGGTGTAGTGGCGTATAGAGGCAATGCTACATGTAAAGTCAATGGCCCGACCAATGTAACTCAGACTGCTGTTGGTTGGAGATGGCAGACGTGTAGTGAGATGGTGATCCCCATAGGGCGTGGAAATGAAACAATGTTTGAACCAAGCCCTTTCGATCTCAAGAGCTATGTGAGGGATTGCAAGAAGGCATATGGTGTCGCACCTCGGCCACATTGGGTCACTACTTACTATGGAGGCCACGATATCAAATTGGTTCTTCAAAGGTTTGGGAGCAACATCATTTTCTCAAATGGGCTAAGAGATCCATATAGTAGCGGAGGGGTTCTGGACAGCATATCAGACACTATCGTTGCCGTCCATACAGTTAACGGATCTCATTGCTTGGATATCCTGAATGCAATGCCAAGCGATCCAGAATGGTTAGTGAAACAACGAACGGAAGAGATCGAGATGATTAAAGGGTGGATTGCACGGTACTATGCGGATCTTCGCGCACTCACAGTGTACTAA 1638 0.4304 MPGSLWCVLTLVDLIYFSTSKLFSLVITGDKKQNKEPFFSLIAMEHPLSIQCLLLISFIFSSYLTATQSSIIPRLSPVGDITLHDSAALMTAEDTDTDTEELKTFYFKQTLDHFNYRPDSYTTFPQRYLINFNYWGGANSSAPIFAYLGAEEPIDDDLNVIGFLNDNAHSFKALIVYIEHRYYGKSVPFGSFEAALKNAKTRGYFNSAQAIADYAAVLIHIKKKLKAQESPVIVIGGSYGGMLASWFRLKYPHVALGALASSAPILYFDNITPSNGYHSVVTRDFREASETCYETILKSWSEIDRVASETDGLSILSQRFNTCRPLNSSSELKDYLETMYNTAAQYNHPPRYPVTVVCGGIDGATFGSDILSKIFAGVVAYRGNATCKVNGPTNVTQTAVGWRWQTCSEMVIPIGRGNETMFEPSPFDLKSYVRDCKKAYGVAPRPHWVTTYYGGHDIKLVLQRFGSNIIFSNGLRDPYSSGGVLDSISDTIVAVHTVNGSHCLDILNAMPSDPEWLVKQRTEEIEMIKGWIARYYADLRALTVY 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1118 545 Gene3D Serine carboxypeptidase S28, SKS domain 273 426 IPR042269 -
Lele11g1118 545 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 83 538 - -
Lele11g1118 545 FunFam Lysosomal Pro-X carboxypeptidase isoform A 106 282 - -
Lele11g1118 545 Pfam Serine carboxypeptidase S28 109 522 IPR008758 GO:0006508|GO:0008236
Lele11g1118 545 Gene3D alpha/beta hydrolase 106 532 IPR029058 -
Lele11g1118 545 SUPERFAMILY alpha/beta-Hydrolases 164 459 IPR029058 -
Lele11g1118 545 FunFam Serine carboxypeptidase S28 family protein 273 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1118 Lele-ChrLele11 18448483 18459413 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1118 11 18448483 18459413 Lele29g0307 29 1817917 1823180 CCT
Lele11g1118 11 18448483 18459413 Lele30g1108 30 14152426 14157771 CCT
Lele11g1118 11 18448483 18459413 Lele31g1242 31 18704363 18709593 CCT
Lele11g1118 11 18448483 18459413 Lele32g0286 32 1783007 1788353 CCT
Lele10g1088 10 22279144 22281926 Lele11g1118 11 18448483 18459413 hybridization