Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1117 ATGCCTCGCCGCGGTCGCAGAAATCAACCTGAAGTTCGCCCGCTTCAACCGTCTCCGGGTCCATCCCAATCTGCCCCGGGTCAAAATGTTGCTCAAGGAGTGTCACAGGGGGGACCCGGACGTGGTGCTCCCTCTGTATCGGTAGCGTCTGCTCCTCCGACTTCGGCCATTACTACAGATGCTCCTCCGTGTAATGAGTTGGCCCAGCTGACGTTGCAGTCTCCGGCGCCTTCGTCGTCAAAAGCCTTGAGATTTGCCGACCGACCAGATTTTGGTAAAATGGGGAAAAAAATTCAAGTTCGTGCGAACCACTTTCTCGTTGATGTTGCTGATAAAGATCTTCATCACTATGATGTATCCATATCTCCAGAAATTACCTCCAAACATATCAATAGGAATGTGATGAATCAATTAATCCAGTTGTACCGAGAGTCACATCTGGACAAACGAATACCAGCTTATGATGGCCGGAAGAGTCTTTTCACAGCAGGTCCTTTACCCTTCTTGTCAAAGGAATTTGTTGTCAAGCTGGTTGACAGCGACGAACATGGCAGTTCTTCTGCTTCAACAAAGAGCAAACGTGAGCGCGAGTTTAAGGTTACTATTCGTTATGCTTCCAAGGCTGATCTCCATCATCTGCAGCAGTTTCTAAGGTGTCGACAGCTGGACAATCCACAAGAAACTATTCAAGCACTTGATGTTGTCCTGAGGGCATCTCCGTCTGCAAAGTACACTGTTGTCGGGAGATCCTTTTTCTCACCAAGTTTGGGTCAAACTGGTGGGCTTGAATCAAGGTTTACTCTTGATGACAAAAGAACAAGAATAAGTGTTGTTCAATATTTTCGTGATAAATACAATGTCGAGCTGGAGTATCTGTCCCTTCCTGCCCTCCAAGCTGGGAATGACACAAAACCTATTTATATGCCAATGGAGCTTTGCAAGATAGCTGCTGGGCAAAGGTACTCAAAGAAACTGAATGAGAGGCAAGTAACTGCCCTTTTGAGAGCAACCTGTCAACGACCTTATGATAGGGAGAAGGACATTAGAGAGATGGCCAGACATAACAATTTTAATAGAGACAAGATCGTGCACGAATTTGGAATCAAAGTGAGTGAAGAACTAGCAGTGTGCGATGCCCGTGTTTTGCCTCCTCCAACGCTTAAATATCATGAAACTGGGAAGGAACCAGTTGTTGAACCCATGAGGGGTCAGTGGAATATGATAAACAAGGTTTTTAATCGAACCCCTTTGCTTCCTATAAGGTCAGCTCCTCCTAGTCAAATAGAGGGAGTTCTTAGAGATGTTTACAAGCACTCTGACAAGAAACTTCAGTTGTTGATTATAATCTTGCCTGACATCAAAGGTTCTTATGCCAAGATAAAACGCATTTGTGAAACAGAATTGGGAATAGTGTCTCAATGCTCTCAGCCCAAGGAAGCTGCAAGGCTACAGAAGCAATATCTTGAAAATTTGGCTCTCAAAATCAATGTTAAGGTTGTAGCATCCATGGATTGGCCTGAGGTCACTATGTACCGTGGAATTGTTTCTGCCCAAGCGCACCGTGAAGAAATTATACTTGATCTCCATAAAACTCAGGATCCTAAGAGGGGAATTATTAGTGAAGGCCAATTCAGTCAGGTTCTACTTCATGAAATGGAAGCTATAAGAAAGGCTTGTGCCTCCTTACAAGAAGGATATATGCCAAGAGTAACTTTCTTGGTAGTACAGAAAAGGCATCACACTCGATTCTTTCCTGTTGATCATAGCAGTCGCGATCAAACTGATAAAAGTGGAAATATTTTGCCAGGCACTGTTGTTGATACTCGTATTTGTCATCCTAGAGAATTTGATTTTTATCTCAACAGTCATGCTGGCATTAAGGGGACTAGCCGACCTACGCATTATCATGTACTGTATGATGAAAACAACTTCAAGGCTGATGAGTTGCAGACTTTAACAAACAACTTGTGTTACACGTATGCAAGGTGCACTAGATCGGTGTCCATAGTTCCTCCTGCTTATTATGCCCATTTGGCAGCTTTCCGTGCTCGCTACTACATTGAAGGCGAGACATCGGATTTGGATTCTGGAAGTGGAAGTAGGAGCACTAACCTGGTGGTAACTCTTCCGGAAATCAAGGACAATGTCAAGGATGTTATGTTTTACTGCTAA 2172 0.4406 MPRRGRRNQPEVRPLQPSPGPSQSAPGQNVAQGVSQGGPGRGAPSVSVASAPPTSAITTDAPPCNELAQLTLQSPAPSSSKALRFADRPDFGKMGKKIQVRANHFLVDVADKDLHHYDVSISPEITSKHINRNVMNQLIQLYRESHLDKRIPAYDGRKSLFTAGPLPFLSKEFVVKLVDSDEHGSSSASTKSKREREFKVTIRYASKADLHHLQQFLRCRQLDNPQETIQALDVVLRASPSAKYTVVGRSFFSPSLGQTGGLESRFTLDDKRTRISVVQYFRDKYNVELEYLSLPALQAGNDTKPIYMPMELCKIAAGQRYSKKLNERQVTALLRATCQRPYDREKDIREMARHNNFNRDKIVHEFGIKVSEELAVCDARVLPPPTLKYHETGKEPVVEPMRGQWNMINKVFNRTPLLPIRSAPPSQIEGVLRDVYKHSDKKLQLLIIILPDIKGSYAKIKRICETELGIVSQCSQPKEAARLQKQYLENLALKINVKVVASMDWPEVTMYRGIVSAQAHREEIILDLHKTQDPKRGIISEGQFSQVLLHEMEAIRKACASLQEGYMPRVTFLVVQKRHHTRFFPVDHSSRDQTDKSGNILPGTVVDTRICHPREFDFYLNSHAGIKGTSRPTHYHVLYDENNFKADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSDLDSGSGSRSTNLVVTLPEIKDNVKDVMFYC 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1117 723 Gene3D - 535 723 IPR036397 GO:0003676
Lele11g1117 723 ProSiteProfiles PAZ domain profile. 263 317 IPR003100 GO:0005515
Lele11g1117 723 Pfam PAZ domain 263 333 IPR003100 GO:0005515
Lele11g1117 723 ProSiteProfiles Piwi domain profile. 539 688 IPR003165 GO:0003676
Lele11g1117 723 Pfam N-terminal domain of argonaute 96 236 IPR032474 -
Lele11g1117 723 Pfam Piwi domain 500 687 IPR003165 GO:0003676
Lele11g1117 723 Pfam Argonaute linker 2 domain 343 389 IPR032472 -
Lele11g1117 723 SUPERFAMILY Ribonuclease H-like 437 688 IPR012337 -
Lele11g1117 723 Gene3D paz domain 193 321 - -
Lele11g1117 723 SUPERFAMILY PAZ domain 213 358 IPR036085 GO:0005515
Lele11g1117 723 MobiDBLite consensus disorder prediction 1 61 - -
Lele11g1117 723 CDD Piwi_ago-like 361 687 IPR045246 -
Lele11g1117 723 Gene3D - 359 501 - -
Lele11g1117 723 CDD PAZ_argonaute_like 263 316 - -
Lele11g1117 723 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 420 689 - -
Lele11g1117 723 SMART Piwi_a_2 445 688 IPR003165 GO:0003676
Lele11g1117 723 ProSiteProfiles Piwi domain profile. 445 499 IPR003165 GO:0003676
Lele11g1117 723 SMART PAZ_2_a_3 207 337 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1117 Lele-ChrLele11 18428225 18433677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1117 232 723 Eukaryotic Initiation Factors Gene Family AT1G48410 47.551 0.0 554