LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g1115	ATGGCCATTGGACTGAAGCTCGGGCCCACCAAGCTCTATATGTTATGTGAAAGTATAGGGATCTGCTTTCTTCTGCATTTGGGTCCTTTGATGGCGGAGGACCGCAACGGCGATAAGAATGAAAACAGTGATTACAGTTCAGAGGATGAAGGAACTGAGGATTACAGGAGAGGAGGTTACCATGCGGTTCGAATTGGGGATACTTTCAATAATGGCTGCTATGTGGTGCAGGCCAAGCTTGGTTGGGGTCATTTTTCTACTGTCTGGCTTGGTTGGGACGTCCAGAGATCGTGTTATGTGGCCTTGAAAATTCAAAAGAGCGCTCAGCACTATACTGAAGCTGCCATGGATGAAATAAAGATTCTTAAACAGGTTGCAGAAGGGGACCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTCAAGCATTCTGGTCCTAATGGTCAGCATGTATGTATGGTGTTTGAATTTCTGGGTGACAATCTTCTGACACTTATCAAATATAGTGATTACAGAGGGGTTCATCTCCCCATGGTTAAAGAAATTTGCTACCATATTTTGGTGGGCTTGGATTACCTGCATCGAGAGGTTTCCATAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTATGATAGATCCATCTAAGGATCACAGAAAGTCAGGTGCCCCGCTCATCCTTGCTAGCACCAAGGACAATTTTGTATCCAAGAATGAGGTCACAAAAGATAATGTAACCTCCATTGGAAGTCTGACTAAAAGCCAAAAAAAGAAAATGCATAGAACGGCTAAGGTTGATAATGAAATTATTGAGGAGACTGAGGGTTCTAAAGATCATGATCAAGAAGATTCTAGGAATGATCTAAAATCAAATGCTGGATCTGTTGAAGATAAACCCAGTAGTTCAATGAGTAAAGATGAACCAACCAAGGTAGTTCAAACTAAGGATGTTCCGCAAGGAAGTCAAAGTCAGAGGAAAAGTAGCCGTTCCATGAGAAAAAAGCTGCTTTCAGCTGTTGATCTAAAGTGCAAACTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAAACAAGGCAGTATAGATGTCCTGAGGTTATTCTTGGATCCAAATACTCAACTCCAGCGGATTTATGGTCTTTTGCTTGCATTTGCTTTGAGCTGGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCACCTGGCATTGATGATGGAACTTCTTGGAATGATGCCTCGCCAGATCGCACTAGGTGGCCGCTATTCCCGGGAATTTTTCAATAGATATGGTGATCTAAGGCACATTCGTCGGTTGCGGTTTTGGCCTCTTAACAAGGTGCTCATGGAGAAGTATAATTTTAGTGAGCAAGATGCAAAAGACATGACAAACTTCCTCGTTCCCATACTTGATTTTGTCCCCGAAAATAGGCCAACAGCCGCTCAGTGTCTTAGTCATACCTGGTTCAGTGCTGGTCCTCGGATTCTTCAGCCCTCTACAACTACCGTGCAACCTGAAGCCATTGAGGGAGGAATGTCTGAAGAAACAAAGCGGGATATGGCTGAGCAGGAAGCTGTGGAAGTTGGTGTGAGCAATATAGCCATTGATGGAACTCCAAAGCCACTCAAAAAGTCCCAATCTGTTAGGTCCCAACCTGGAAATCTTCCTTTGTGA	1731	0.431	MAIGLKLGPTKLYMLCESIGICFLLHLGPLMAEDRNGDKNENSDYSSEDEGTEDYRRGGYHAVRIGDTFNNGCYVVQAKLGWGHFSTVWLGWDVQRSCYVALKIQKSAQHYTEAAMDEIKILKQVAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVHLPMVKEICYHILVGLDYLHREVSIIHTDLKPENVLLLSMIDPSKDHRKSGAPLILASTKDNFVSKNEVTKDNVTSIGSLTKSQKKKMHRTAKVDNEIIEETEGSKDHDQEDSRNDLKSNAGSVEDKPSSSMSKDEPTKVVQTKDVPQGSQSQRKSSRSMRKKLLSAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRQIALGGRYSREFFNRYGDLRHIRRLRFWPLNKVLMEKYNFSEQDAKDMTNFLVPILDFVPENRPTAAQCLSHTWFSAGPRILQPSTTTVQPEAIEGGMSEETKRDMAEQEAVEVGVSNIAIDGTPKPLKKSQSVRSQPGNLPL	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g1115	576	Pfam	Protein kinase domain	74	214	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g1115	576	Pfam	Protein kinase domain	345	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g1115	576	MobiDBLite	consensus disorder prediction	256	336	-	-
	Lele11g1115	576	ProSitePatterns	Protein kinases ATP-binding region signature.	80	103	IPR017441	GO:0005524
	Lele11g1115	576	FunFam	CMGC/SRPK protein kinase	60	159	-	-
	Lele11g1115	576	SMART	serkin_6	74	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g1115	576	CDD	STKc_SRPK	63	508	-	-
	Lele11g1115	576	MobiDBLite	consensus disorder prediction	266	297	-	-
	Lele11g1115	576	ProSiteProfiles	Protein kinase domain profile.	74	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g1115	576	SUPERFAMILY	Protein kinase-like (PK-like)	69	519	IPR011009	-
	Lele11g1115	576	MobiDBLite	consensus disorder prediction	555	576	-	-
	Lele11g1115	576	MobiDBLite	consensus disorder prediction	562	576	-	-
	Lele11g1115	576	FunFam	Serine/threonine-protein kinase SRPK-like protein	338	508	-	-
	Lele11g1115	576	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	40	530	-	-
	Lele11g1115	576	Gene3D	Phosphorylase Kinase; domain 1	50	156	-	-
	Lele11g1115	576	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Lele11g1115	576	Gene3D	Transferase(Phosphotransferase) domain 1	157	509	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g1115	Lele-ChrLele11	18407789	18411068	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g1115	31	559	EF-hand Containing Proteins	AT5G22840	65.918	0.0	719

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Lele11g1115		Pkinase	1.1e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g1115	09	20299802	20302366	Lele11g1115	11	18407789	18411068	hybridization
	Lele10g1081	10	22182943	22185369	Lele11g1115	11	18407789	18411068	hybridization