Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1104 ATGACTAGTGTCGAGGTTAAGGTTGGGGAGTCTGTTAAAGTTGATCCTCAAGAGTTTGATGCCTACATTCATCTTTCTCAGGCTGCTCTTGGAAAAGCTGATGCTAAGACTGCCCTAGCGAAGATTGCAGCATCCAAAAAAAGTGCTGCCAGTGCTAATGATTCCAAAAAGCAAGGCAAGGTTGATCCAAAGAATGATGAAGATGATGACGATGATGAATCTGATGATGAAGATGATTTGGATGGGGGTTCTGATGAGGATATGCTGGATGGGGAAAGTGATAGCGATGACGAGAGTGATGATGATGAAGATGATGAGGAGACTCCCAAGAAGCCGGATCTGAGTAAGAAGAGACCCAATGATTCTGCACTAAAAACTCCAGTTTTTGCCAAGAAAGCTAAAGCTGGTACTCCTGAAAAAAAAGATGCTAAGAAAGGTGGTCATACTGCAACTCCTCACCCAATGAAGAAGGGGGGAAAGACTCCTAACAGTGAAACCAAGGAGCCTAAGTCTGGTGGACATTTGTCCTGCAAATCTTGCAGCAAGACTTTCAACTCTGAAAGTGGTCTTCAACAACATAACAAGGCAAAGCACAGTGGCCAGTAA 606 0.4389 MTSVEVKVGESVKVDPQEFDAYIHLSQAALGKADAKTALAKIAASKKSAASANDSKKQGKVDPKNDEDDDDDESDDEDDLDGGSDEDMLDGESDSDDESDDDEDDEETPKKPDLSKKRPNDSALKTPVFAKKAKAGTPEKKDAKKGGHTATPHPMKKGGKTPNSETKEPKSGGHLSCKSCSKTFNSESGLQQHNKAKHSGQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1104 201 ProSitePatterns Zinc finger C2H2 type domain signature. 177 198 IPR013087 -
Lele11g1104 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 201 IPR013087 -
Lele11g1104 201 MobiDBLite consensus disorder prediction 41 201 - -
Lele11g1104 201 MobiDBLite consensus disorder prediction 165 201 - -
Lele11g1104 201 MobiDBLite consensus disorder prediction 65 108 - -
Lele11g1104 201 SUPERFAMILY beta-beta-alpha zinc fingers 155 197 IPR036236 -
Lele11g1104 201 MobiDBLite consensus disorder prediction 134 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1104 Lele-ChrLele11 18312679 18314768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1104 108 194 C2H2 Transcription Factor Family AT3G44750 51.136 1.29e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g1104 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0314 29 1897110 1900429 Lele11g1104 11 18312679 18314768 CCT
Lele30g1094 30 14072131 14075434 Lele11g1104 11 18312679 18314768 CCT
Lele09g1104 09 20210327 20212735 Lele11g1104 11 18312679 18314768 hybridization
Lele10g1071 10 22048581 22050999 Lele11g1104 11 18312679 18314768 hybridization