Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele11g1080 | ATGTACAGCAACTTTAAGGAGCAAGCGATAGAATATGTTAAACAAGCCGTGCAGGAAGACAATGCTGGGAATTATGCAAAAGCTTTTCCTTTGTATATGAATGCTTTAGAGTATTTCAAGACCCATTTGAAGTATGAGAAAAACCCTAAGATTAAAGACGCGATAACCCAGAAATTCACGGAGTATCTGCGGCGGGCAGAGGAGATCCGAGCTGTTCTTGACGACGGAGGGCCTGGCCCGGCGTCCAATGGGGATGCTGCAGTAGCTACGCGGCCTAAGACAAAGCCGAAGGACGGGGAAGGTGATGGGGAAGATCCAGAGCAATCGAAGCTCAGGGCTGGGCTGAATTCAGCAATCATTCGGGAGAAACCTAATGTGAAGTGGAATGATGTTGCTGGGTTGGAGAGCGCGAAGCAAGCATTGCAGGAGGCGGTTATCTTGCCCGTCAAGTTCCCGCAATTCTTTACCGGTAAAAGACGGCCTTGGAGAGCATTTCTGTTGTATGGCCCACCTGGTACGGGTAAATCATATTTGGCCAAGGCTGTTGCAACTGAAGCTGACTCCACATTTTTTAGTATTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTATCAAACCTTTTCCAAATGGCCCGAGAAAGTGCCCCTTCCATCATATTTATTGATGAAATAGATTCTCTATGTGGTCAGCGTGGTGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTACTTGCAGCAACAAATACGCCTTATGCTTTAGATCAGGCAATAAGGCGGCGTTTTGATAAGCGCATATACATTCCACTACCAGATTTAAAGGCTCGTCAACACATGTTTAAGGTGCATTTAGGAGATACTCCTCATAGCTTGAGTGAAAGTAATTTTGAGCACTTGGCTTGCAGGACAGAGGGGTTTTCGGGTTCAGATGTTTCTGTCTGTGTCAAGGATGTTTTATTTGAGCCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGCATGTGGATCCCTTGTGGACCAAAGCAAGAGGGTGCAGTTCAAGTTACCATGCAGGATCTGGCCGCAAAAGGACTCGCTTCCAAGATCCTTCCACCACCTATTACAAGAACAGATTTTGATAAGGTGCTTGCTAGACAAAGGCCTACTGTAAGCAAAGCTGACCTTGAGGTTCATGAGAGATTCACGAAAGAGTTTGGAGAGGAGGGTTGA | 1299 | 0.4565 | MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKDAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGDGEDPEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLSESNFEHLACRTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQEGAVQVTMQDLAAKGLASKILPPPITRTDFDKVLARQRPTVSKADLEVHERFTKEFGEEG | 432 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele11g1080 | 432 | Pfam | Vps4 C terminal oligomerisation domain | 365 | 429 | IPR015415 | - | |
Lele11g1080 | 432 | FunFam | vacuolar protein sorting-associated protein 4A | 297 | 412 | - | - | |
Lele11g1080 | 432 | FunFam | Suppressor of K+ transport growth defect 1 | 6 | 75 | - | - | |
Lele11g1080 | 432 | PANTHER | AAA DOMAIN-CONTAINING | 16 | 430 | - | - | |
Lele11g1080 | 432 | CDD | AAA | 132 | 295 | - | - | |
Lele11g1080 | 432 | Gene3D | - | 297 | 412 | - | - | |
Lele11g1080 | 432 | MobiDBLite | consensus disorder prediction | 91 | 109 | - | - | |
Lele11g1080 | 432 | FunFam | Vacuolar protein sorting-associated protein 4 | 124 | 304 | - | - | |
Lele11g1080 | 432 | ProSitePatterns | AAA-protein family signature. | 267 | 286 | IPR003960 | GO:0005524|GO:0016887 | |
Lele11g1080 | 432 | SMART | smart | 2 | 79 | IPR007330 | - | |
Lele11g1080 | 432 | CDD | MIT_VPS4 | 4 | 77 | IPR045253 | - | |
Lele11g1080 | 432 | SUPERFAMILY | MIT domain | 2 | 81 | IPR036181 | - | |
Lele11g1080 | 432 | Pfam | ATPase family associated with various cellular activities (AAA) | 166 | 295 | IPR003959 | GO:0005524|GO:0016887 | |
Lele11g1080 | 432 | MobiDBLite | consensus disorder prediction | 73 | 110 | - | - | |
Lele11g1080 | 432 | Gene3D | - | 6 | 75 | - | - | |
Lele11g1080 | 432 | SMART | AAA_5 | 161 | 297 | IPR003593 | - | |
Lele11g1080 | 432 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
Lele11g1080 | 432 | Gene3D | - | 124 | 420 | IPR027417 | - | |
Lele11g1080 | 432 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 124 | 428 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele11g1080 | Lele-ChrLele11 | 18060894 | 18064103 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele11g1080 | 160 | 353 | Calmodulin-binding Proteins | AT3G56690 | 37.755 | 4.70e-36 | 139 |