Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1073 ATGGCTTTGAGGGAATATTACAGTGAAAAAGACAGGAGTATGAACTTTCATGCTCCAACTTTCTTTGAATGGCTCAAACCATTTTCATATCCTCCTCCTCCTTCTTCATCTTCTGTGATTCATCAACAAGAGACTATTCAGTTTTTGCCAATTTTAACTGAAAAGCCCTTAAAAGATCAGGAAGGCTATAGAACTATTGGAGTACTTAAAGAAGAGAAGGGCGATGACGAAGACGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAACAGTACACAAGGTTTTGAGGTTGATGATGACGATGATCAGAAGAATAAGAAAGTTTCAGATGTGAAGGAAGAAGAAGAAGGAAAACAAGGGGTGAATAATAGAAGCTTTCATTCTAACACAGAGAGAAGGTTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCAATATGCAGCAAGACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTATAGAAAAGGATCAGAATCACTGAAAGGGACACAACCAGCAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCACAAGGCTGCAAGAACAACATAAACCATCCAAGAGGCATGCCTCTTAAGGACTTCAGAACCCTACAAACACACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGGAAATGCGCCAAAACCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTCTGGTATTGTTCCTGCGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTTGTTTTGATGAAGATGATCACAACAAGGAATATTCCATCACTAGTAATACTACTGCCTCTCAAGAATGTTAA 933 0.4137 MALREYYSEKDRSMNFHAPTFFEWLKPFSYPPPPSSSSVIHQQETIQFLPILTEKPLKDQEGYRTIGVLKEEKGDDEDEQVTVALHIGLPNSTQGFEVDDDDDQKNKKVSDVKEEEEGKQGVNNRSFHSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGSESLKGTQPAAMLRLPCYCCAQGCKNNINHPRGMPLKDFRTLQTHFKRKHGSKPFVCRKCAKTFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIRSFGKGHSPCFDEDDHNKEYSITSNTTASQEC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1073 310 MobiDBLite consensus disorder prediction 91 127 - -
Lele11g1073 310 Pfam Zinc finger, C2H2 type 150 169 IPR013087 -
Lele11g1073 310 SMART c2h2final6 234 254 IPR013087 -
Lele11g1073 310 SMART c2h2final6 150 172 IPR013087 -
Lele11g1073 310 SMART c2h2final6 197 229 IPR013087 -
Lele11g1073 310 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Lele11g1073 310 Gene3D Classic Zinc Finger 230 291 - -
Lele11g1073 310 MobiDBLite consensus disorder prediction 98 122 - -
Lele11g1073 310 Gene3D Classic Zinc Finger 149 172 - -
Lele11g1073 310 SUPERFAMILY beta-beta-alpha zinc fingers 220 254 IPR036236 -
Lele11g1073 310 FunFam Zinc finger protein WIP2 203 285 - -
Lele11g1073 310 PANTHER ZINC FINGER PROTEIN WIP2 26 297 IPR043584 GO:0003700|GO:0010468
Lele11g1073 310 SUPERFAMILY beta-beta-alpha zinc fingers 141 173 IPR036236 -
Lele11g1073 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1073 Lele-ChrLele11 18019820 18022065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1073 8 287 C2H2 Transcription Factor Family AT1G08290 53.823 8.91e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g1073 zf-C2H2_6 3.1e-05 CL0361