Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1070 ATGATGATTTTTGCATGCCTCAAGAGAAAAGCCTCAACACTGAAGGGAGGAGGTTCTATATCAGAGAAGCAACTTGATCCAAAGACATTGAGGCGTCTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGAAAAAAGGGACTATTGGTGGGCTGTGGTGGGACTACTACTGCTAGCACCGATATGAGTTCAGGTGCAGCAATATTTGACATGGAATATGGGAGATGGTTGGAAGAAGACCAGCGGCAGGTGAAGGAGCTGCGGCGGAGCTTGGAGGCGGCGGTGCCGGACCATGAACTGAGAGGGATGGTGGAGAATTATCTGAGACACTACGACGAGATCTTTGAATTGAAGGGAGTGGCAGCAAAATCAGATGTGTTTCACGTCATGAACGGAATGTGGACCACCCCCGCCGAGCGATGCTTCCTCTGGATCGCCGGCTTCAGACCCTCCGATCTCATCGGGATGTTGATACAGCAGTTAGAGCCGGTGGCGGAGCAGCAAATACTGGGCATGTGTGAGCTGAGACAGTCGACACAGCAAGCGGAGGAAGCTCTGAGTCAAGGGCTCGATCAGCTTCAGCATTCTCTACTTCACACAGTCGTTGGAGGCCTCACTGTCGACGGTGTTCACCAGATGTTTCTCGCCATGACCAAGCTTTCCAATCTCGAAGCCTTTATCCGCCAGCAAACACTTCACCAGTTGTGTCGACTACTAACAGTTCGTCAAGCAGCAAGATGTTTTCTTGTGATCGGAGAGTACTATGGTCGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCACGACCACGAGAGTAA 822 0.5097 MMIFACLKRKASTLKGGGSISEKQLDPKTLRRLAQNREAARKSRLRKKGLLVGCGGTTTASTDMSSGAAIFDMEYGRWLEEDQRQVKELRRSLEAAVPDHELRGMVENYLRHYDEIFELKGVAAKSDVFHVMNGMWTTPAERCFLWIAGFRPSDLIGMLIQQLEPVAEQQILGMCELRQSTQQAEEALSQGLDQLQHSLLHTVVGGLTVDGVHQMFLAMTKLSNLEAFIRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1070 273 PANTHER TRANSCRIPTION FACTOR TGA9 21 273 - -
Lele11g1070 273 Pfam Seed dormancy control 85 159 IPR025422 GO:0006351|GO:0043565
Lele11g1070 273 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 31 46 IPR004827 GO:0003700|GO:0006355
Lele11g1070 273 ProSiteProfiles DOG1 domain profile. 68 270 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1070 Lele-ChrLele11 17950104 17954235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1070 8 273 bZIP Transcription Factor Family AT1G08320 57.095 8.00e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele11g1070 DOG1 7.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1070 11 17950104 17954235 Lele29g0351 29 2151639 2154472 CCT
Lele11g1070 11 17950104 17954235 Lele30g1056 30 13830253 13833099 CCT
Lele11g1070 11 17950104 17954235 Lele31g1189 31 18331239 18334125 CCT
Lele11g1070 11 17950104 17954235 Lele32g0336 32 2100170 2102960 CCT
Lele09g1067 09 19878233 19884201 Lele11g1070 11 17950104 17954235 hybridization
Lele10g1037 10 21692241 21696375 Lele11g1070 11 17950104 17954235 hybridization