Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1068 ATGGACAGATACTCAAGAACTTCACAGCTTCCTATTTATCAAAAAGTTCATTGGTTCTCATTTGTCAACTCAATTGTCATCATTTTTCTATTGATGGGTTTGCTTACAGTGCTTTATATAAGGCATCTGAAAAGATTTTCTATTGTAAATCATGAAGACGATAAAGAGGTTGGTTGGAAGTATATTCATGGCGATGCGTTTCAACAACCTCCCAACTCGCCCTTATTTTTTGCTGTCCTGGGGACGGGTACCCAATTGCTAATCTTGTGCATGACAACTGGTTTTATTTGTACTGCTGTCTATAATTCTGTTAGCAATCCTAACCTAAGACTCCATGAGAAGAGTGTTATTCTATCAGGATTACTGTATACTGGACCAGTGTTTGTTACAGCCTCAGTCCTCAACACCCTTGCATTATCTTATGGGGCCACAGCTGCACTCCCATTTGGCTCTCTTGTCGTGATTCTTATTTTATTTATATTTCTTGTGATCCCACTGCTTGCGCTTGGTGGAGTGATTGGATATCAGTTTAGATCTGAATTTCAAGTCTCCTCTACTTCAAGGAGACATCCTAGGGAGATTCAATGGCTTGCTTGGTATAGGAAAACACCCTGTCTAATGTTTATTGGGGGTCTTGTGCCTTTTGGTGCTGTTTTCCTTCAATTACCCCACTTGTGTGCAAGTATGTGGGGCTACAAAATATACACTCTTCCTGGCATGCTGTTTGTCACCTTCATTACTGTCATTCTGATTACTGCACTCGTCAATATTGGTTTGACATACATTCAAATATCCTTGGAAGACCATGAATGGAGGTGGAGATCTGTGCTGATGAGTGGCTTAATGCAGCTATCTTTCTTTATTGGTTATGATGCGTGCATGTGTCATGCGTTCTTCCTAATATTGGATTTGTGGAGTGCCCTACACAGGACTTTCTTGGCCACATGTCACAAAGCATCAGCAGATGAAATGACTGGTCATTTTAAAAGGAGGTGTCAGGACACAGTACGCAATGTCAGTCCTGATGCCTACAATGACAGCCCAGCAAAGATGCGATTTTGTATACGCACAAACAGCACCAAAGCATGCGTTGAGCCAAAAAAAGAATGTGATATGGTTAAGGAAATTGTAGCAACAAAATTTTCTATATTTAATAACTCAGTTCTGGATGCAGTTGACACAAGCCAATGTGTAAGTCAAGTGGTCCTCTGGTGTTGTCCTGTATTGAGAGCTGCAAGTACTATTCTGGCTTTCCCTTTTCAAACAGGTCCCTGCTCTTTGCTTAAAGACACCAAGGTGGGATCGATGTATCATAATCATCACCAGAATCACACGAATAACATCCTTTCTTCTTCTTCTTCCAGTGGAATGCCTATTCCTTCTGAGAGGCATTTCTTCCTTCGAAGTGGAAATGGTTCAGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAACCCAGGTTGAAATGGACACCAGATCTCCATGCCCGATTTATTGAAGCAGTCAATCAGCTGGGAGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTCACTTTGTATCATCTTAAGAGCCATCTTCAGATCAATTTTTTGCTTACAAAGAACATGTTTATCTTATTCACGCCAGCACCAAATGCAAGTGCCGTTAGTGGAGAAAGACTTTCTGAAGCAAATGGAATTCACAATCATATGAACAATAATCTAACCCTTGGGCCGCAACAGCAGGGTAATAATAACAAAGATTTACATATAAGCGAGGCGTTGCAGATGCATATTGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTTCAGAGACACTTGCAGCTCCGAATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAGGAGACGCTTGGAAGACAGAATTTAGGAATAGTAGGTCTTGAAGCTGCCAAAGTGCAACTCTCAGAACTAGTTTCCAAAGTATACTCTCAATGTCTGAGTTCTGCTTTTTCAGAGCTGAAGGAATTAAACACATTTAATAGCCCCCAGATCAACAACACAAGAACCAACCAACCCAATGACTGTTCAATGGACAGTAGCCTCACATCCTGCGAGGGATCTCAAAGGGATCAAGAGAATATTCCAATTGGTGCTGGTATCTGCTTAACGAGACCTTTTAATGGCTGCCACACCTTCATGGAACCAAACAAAGACGCGGCAGAGGCGAAAAAGAACGACAACAACAATAATAATTTTCTCAACCCTTTCGGCAAGAATAATATATCAGAAAGAAGTGCCGCTGGCAACTTAACAATGAGCATTGGAGTTGAAGGAGAAACGAGAAATGGAAGCAGCATCTATCCTGAGAGAATAACAATGGGGAGAGACTCAGATAATGATCAGTTCCAGCATCGAAGCACCAATAATAGAACAGAAGGGATGAAATTAGCAGTGGACGAAAAAGTTGCAGGAGATTATAGATTGCCGCCGTACTTTGTTACACCAAGATTAGACCTTAACAGCCACCAAGAAAATAACGATGGCGCACAGAAGATCGAAGCGTATGCAGAAAACAATAGTGCAGCAAATTTTGGATTAATGTGTTGTACTATTACAATACGATCAGTTTCTGATTCTCTCTCATCACAATTGGCTATAGATGAGTGA 2670 0.415 MDRYSRTSQLPIYQKVHWFSFVNSIVIIFLLMGLLTVLYIRHLKRFSIVNHEDDKEVGWKYIHGDAFQQPPNSPLFFAVLGTGTQLLILCMTTGFICTAVYNSVSNPNLRLHEKSVILSGLLYTGPVFVTASVLNTLALSYGATAALPFGSLVVILILFIFLVIPLLALGGVIGYQFRSEFQVSSTSRRHPREIQWLAWYRKTPCLMFIGGLVPFGAVFLQLPHLCASMWGYKIYTLPGMLFVTFITVILITALVNIGLTYIQISLEDHEWRWRSVLMSGLMQLSFFIGYDACMCHAFFLILDLWSALHRTFLATCHKASADEMTGHFKRRCQDTVRNVSPDAYNDSPAKMRFCIRTNSTKACVEPKKECDMVKEIVATKFSIFNNSVLDAVDTSQCVSQVVLWCCPVLRAASTILAFPFQTGPCSLLKDTKVGSMYHNHHQNHTNNILSSSSSSGMPIPSERHFFLRSGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQINFLLTKNMFILFTPAPNASAVSGERLSEANGIHNHMNNNLTLGPQQQGNNNKDLHISEALQMHIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVYSQCLSSAFSELKELNTFNSPQINNTRTNQPNDCSMDSSLTSCEGSQRDQENIPIGAGICLTRPFNGCHTFMEPNKDAAEAKKNDNNNNNFLNPFGKNNISERSAAGNLTMSIGVEGETRNGSSIYPERITMGRDSDNDQFQHRSTNNRTEGMKLAVDEKVAGDYRLPPYFVTPRLDLNSHQENNDGAQKIEAYAENNSAANFGLMCCTITIRSVSDSLSSQLAIDE 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1068 889 MobiDBLite consensus disorder prediction 742 763 - -
Lele11g1068 889 MobiDBLite consensus disorder prediction 775 807 - -
Lele11g1068 889 MobiDBLite consensus disorder prediction 684 710 - -
Lele11g1068 889 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 441 751 IPR044848 GO:0003700
Lele11g1068 889 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 485 539 IPR006447 GO:0003677
Lele11g1068 889 Gene3D - 484 538 - -
Lele11g1068 889 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 542 IPR017930 -
Lele11g1068 889 SUPERFAMILY Homeodomain-like 484 543 IPR009057 -
Lele11g1068 889 Pfam Myb-like DNA-binding domain 487 535 IPR001005 -
Lele11g1068 889 Pfam Endomembrane protein 70 3 105 IPR004240 GO:0016020
Lele11g1068 889 Pfam Endomembrane protein 70 91 288 IPR004240 GO:0016020
Lele11g1068 889 MobiDBLite consensus disorder prediction 746 763 - -
Lele11g1068 889 Pfam MYB-CC type transfactor, LHEQLE motif 591 637 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1068 Lele-ChrLele11 17929547 17941562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1068 1 278 Miscellaneous Gene Families AT1G08350 46.474 2.15e-77 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele11g1068 EMP70 3.5e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1065 09 19859189 19861185 Lele11g1068 11 17929547 17941562 hybridization
Lele10g1033 10 21661922 21664036 Lele11g1068 11 17929547 17941562 hybridization