Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1066 ATGGGAGAGGCAGAGAAGGTGGTGCCGGAGGCGGAGGAGCTACCCAAGGCTATAGTGCGCCGGGTAGTGAAAGACGAGCTCTCACGGTGCTCCGACGACGGAGACATTTTGATTCACAAAGATGCCCTTCTCGCTTTCTCGGAAAGCGCGCGGATCTTTATACACTACCTTTCCGCAACGGCCAACGACATATGCAAGGAAGCAAAGAGGCAGATAATAAGCGCCGATGATGTATTTAAAGCTCTTGAAGAGACTGAGTATTCCGAGTTTGTCGGGCCCCTAAAAGCTTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGAAAGAAAGCGGGTGGATCAAAAGAAAAGGATGAGAAGAAGAAAAGAAAGTTAGAAGATGAATCATCTGATAAAGACGAGGGTGGTGACAACAAATGA 417 0.4772 MGEAEKVVPEAEELPKAIVRRVVKDELSRCSDDGDILIHKDALLAFSESARIFIHYLSATANDICKEAKRQIISADDVFKALEETEYSEFVGPLKASLEEFRKKNAGKKAGGSKEKDEKKKRKLEDESSDKDEGGDNK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1066 138 SUPERFAMILY Histone-fold 14 127 IPR009072 GO:0046982
Lele11g1066 138 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 10 135 - -
Lele11g1066 138 MobiDBLite consensus disorder prediction 105 138 - -
Lele11g1066 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 82 IPR003958 -
Lele11g1066 138 Coils Coil 65 85 - -
Lele11g1066 138 FunFam DNA polymerase epsilon subunit 3 6 138 - -
Lele11g1066 138 Gene3D Histone, subunit A 6 138 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1066 Lele-ChrLele11 17919566 17920991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1066 14 102 CCAAT-HAP3 Transcription Factor Family AT5G47640 33.708 5.70e-10 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele11g1066 CBFD_NFYB_HMF 3.5e-09 CL0012