Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1065 ATGCCACGAGGAAAGGAAAATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGATTGATCTTGATGAAGAAAATGATCCTGAGGAAACGATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAAGAGGAAGAGGAAGAGGTTGAAGAAGAAGATGATGATGATACTGATCATGCCCATGACCCTGATGCCATGCATAACATTAGCAGTGATGAGGCAAAGGTGGAAGATGATGATGAAAAGAAAAAGAATGCAGAACTTCTCTCTCTTCCCCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTAGGGTTATGAAAGGAAAAGATTCTGCTGAAAACAAGGGCTTTGGATTTGTGACCTTCAAAAGTGTAGAATTGGCTTCTAAAGCCATTGAAGAGCTGAATAATAAACAATTTAAGGGTAGAAAGATAAAATGTTCATCATCTCAAGCCAAACACAGACTTTTCATTGGTAATGTTCCTAGAATCTGGGGAGATGAGGATCTAAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACAACTGTGGAACTAGTCAAGGATATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATTCAAAATTCAAGCTAGGTAACAATGCTCCTACAGTGAGCTGGGCTGACCCTAAAAATGCTGAGTCATCTGCTACATCTCAGGTGAGGGCAGTATATGTCAAGAACTTACCCAAGGATGTAACTGGAGATGAACTAAAGAAAATTTTTGAACACCATGGTAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGACTGCTCTCTAGCAAAGCCACAGGTTGATAAGTCTGGAGGATCAAATACACAGAAGTCAGGATTGCTTCCCGGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGTGCTAGGCGCTGGATATGGTGCTGCAGGTCTTGCACAGCCCATGATACATGGAAGGGGTCCAGCTCCATCTGGAATGCCCATGATGCCCATGCTTTTGCCAGACGGACGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCACCTGCACAACATAGAGGTGGTGGCAGAAATGGAGGGAGTGGCAGCAGGAACTTCGGCAGTTCAAGCAAGGGAAGGCACAACAATTCGAGTGGCCAAGGGCGCAGATATCGTCCATATTAG 1488 0.4321 MPRGKENSSSVAKPSEPEKPTESDEKIDLDEENDPEETMEEEIEYEEVEEEEEVEEIEEEVEEEEEEEEEEVEEEDDDDTDHAHDPDAMHNISSDEAKVEDDDEKKKNAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVTEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELNNKQFKGRKIKCSSSQAKHRLFIGNVPRIWGDEDLRKVVTEIGPGVTTVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDSKFKLGNNAPTVSWADPKNAESSATSQVRAVYVKNLPKDVTGDELKKIFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLDCSLAKPQVDKSGGSNTQKSGLLPGYPPHVGYNLIGGAYGVLGAGYGAAGLAQPMIHGRGPAPSGMPMMPMLLPDGRIGYVLQQPGMQPQTPPAQHRGGGRNGGSGSRNFGSSSKGRHNNSSGQGRRYRPY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1065 495 MobiDBLite consensus disorder prediction 27 82 - -
Lele11g1065 495 SUPERFAMILY RNA-binding domain, RBD 116 284 IPR035979 GO:0003676
Lele11g1065 495 Gene3D - 200 280 IPR012677 -
Lele11g1065 495 CDD RRM_SF 121 193 - -
Lele11g1065 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Lele11g1065 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Lele11g1065 495 Gene3D - 39 199 IPR012677 -
Lele11g1065 495 SMART rrm2_1 294 367 IPR003954 GO:0003676
Lele11g1065 495 SMART rrm2_1 120 193 IPR003954 GO:0003676
Lele11g1065 495 FunFam RNA recognition motif-containing protein 21 199 - -
Lele11g1065 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Lele11g1065 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 266 IPR000504 GO:0003723
Lele11g1065 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Lele11g1065 495 Gene3D - 281 386 IPR012677 -
Lele11g1065 495 SUPERFAMILY RNA-binding domain, RBD 288 394 IPR035979 GO:0003676
Lele11g1065 495 MobiDBLite consensus disorder prediction 83 105 - -
Lele11g1065 495 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
Lele11g1065 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Lele11g1065 495 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 481 - -
Lele11g1065 495 MobiDBLite consensus disorder prediction 469 495 - -
Lele11g1065 495 Coils Coil 38 78 - -
Lele11g1065 495 MobiDBLite consensus disorder prediction 1 105 - -
Lele11g1065 495 MobiDBLite consensus disorder prediction 446 495 - -
Lele11g1065 495 SMART rrm1_1 294 367 IPR000504 GO:0003723
Lele11g1065 495 SMART rrm1_1 120 193 IPR000504 GO:0003723
Lele11g1065 495 SMART rrm1_1 200 277 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1065 Lele-ChrLele11 17915367 17918680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1065 119 375 Eukaryotic Initiation Factors Gene Family AT1G71770 27.037 1.07e-17 84.3