LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g1045	ATGAGTTTCAGGAGGCCTACTCATCAGCAGGGTCTGTCGCTGAGCCTTTCATCTCAACAGACAGCTTATAGGTCACTTTCCAGCGAGCTTGACGTTCCTGGGCAACCTCAAGCTGGTGCTGTCATACCAACCTCGAACGGCGACGATGTAAGGATTCTGGTTCCAAGTAATCATCATCATGCTTCGTCGAATGGAATTTCAAGTGTTCAGAGTTTTGTTTTAGGATCCAAGTATTTGAGAGCAGCTCAGGAGGTTTTGGATGAAGTTGTTAATGTGGGTAACAAGGGAATCGACCAAGAGGAAGGGGCTATGAAAGAGAAGACGAAAGCGAATAAAGAATCAACATCTGGTTGGAATCACGACGGTTCAAGTGGCGGTGACGGTGGTGGAGAAAATAGTGGAAATGACAAGCAAGGACAAGGAGGTGAACTCAGTACAGCACAGAGACAGGAACTTCAGATGAAGAAATCCAAGCTTGTCACCATACTTGATGAGGTGGAACAAAGGTACAGACAATATCACCACCAAATGCAGATAGTGATAGCATCGTTCGAGCAAGCTGCTGGATATGGAGCAGCGAAAACATACACATCACTTGCCCTAAAGACGATCTCTAAGCAATTTCGATGTCTCAGAGATGCAATCGCTTCACAAATACGTGCCACAAGCAAGACCATAGGGGAAGATGATTGCTTGGGAGCTAAGGTTGAAGGTTCCAGGCTGAGGTTTGTGGACCATCATCTTCGTCAACAAAGGGCTTTACAGCAACTTGGAATGATTCACCACAATGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGAGCCGTCTCCATTCTTCGTGCTTGGCTCTTCGAGCATTTTCTTCACCCCTACCCAAAGGACTCTGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGTAGCCAAGTGTCAAACTGGTTCATAAATGCTCGGGTTCGGCTATGGAAACCAATGGTGGAAGAAATGTACACGGAAGAAATGAAAGATCAAGAAGGGAACAAGAACAAGAACAAGAACAACAACAATAAGGAGGTGGGGTCATCAAGCACTAAGGATAATTCACAGCCACAAGATCATCATCAGATGAATAGCTTCCAATCAAATAATCCAGATCAAAGCTTCAACAACCAAACAACCGACATCTCAAATTCGTCAATCTACCTTCATCGTCCTCATCATTCTTCATCAGGATTCCCAGGATCGTCTTCTCGTCATCATCACCATCATCGTCCTGACATGCAAATAAGAACGAGTCCCAAGAAACCAAGAAGTTCAGAAGTAATGAACAATTCTCCGAGCAGTATCCTGTCGGTGGACATGGAAATGAAGCCGGGAGATCATAATCCAGACAGATCAGAAGGCAACACTACAAATTTTGGCATGATAATTAGTAGTAATCATGGGAATGATCATGGAGGAGCCGGAGGAGGAGGAGGATATGGAGGGTTCACCATGGAAGACATCGGAAGGTATAACATGGCAGCTGACCAATTAGCTCCAAGGTTCCATGGAAACGGCGTGTCGCTTACTCTTGGACTTCCCCACAGCAATGATAATAATAACCTTCCTGGCCATGGATTTCTGTCGCCCAACATGAACTTGACGGCGGATGGAACTGAGTTCTGCGCGATCAACGCTCCGCCGCCATCTCTTTCCAACACAAGTTATGAGAATATTGATCATATTCAGAACAGAAAGAGGTTTGCTGCCCAGTTATTGCCGGATTTTGTGGCCTGA	1761	0.4549	MSFRRPTHQQGLSLSLSSQQTAYRSLSSELDVPGQPQAGAVIPTSNGDDVRILVPSNHHHASSNGISSVQSFVLGSKYLRAAQEVLDEVVNVGNKGIDQEEGAMKEKTKANKESTSGWNHDGSSGGDGGGENSGNDKQGQGGELSTAQRQELQMKKSKLVTILDEVEQRYRQYHHQMQIVIASFEQAAGYGAAKTYTSLALKTISKQFRCLRDAIASQIRATSKTIGEDDCLGAKVEGSRLRFVDHHLRQQRALQQLGMIHHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKDQEGNKNKNKNNNNKEVGSSSTKDNSQPQDHHQMNSFQSNNPDQSFNNQTTDISNSSIYLHRPHHSSSGFPGSSSRHHHHHRPDMQIRTSPKKPRSSEVMNNSPSSILSVDMEMKPGDHNPDRSEGNTTNFGMIISSNHGNDHGGAGGGGGYGGFTMEDIGRYNMAADQLAPRFHGNGVSLTLGLPHSNDNNNLPGHGFLSPNMNLTADGTEFCAINAPPPSLSNTSYENIDHIQNRKRFAAQLLPDFVA	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	23	46	-	-
	Lele11g1045	586	FunFam	BEL1-like homeodomain protein 9	268	330	-	-
	Lele11g1045	586	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	41	350	-	-
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	335	463	-	-
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	115	145	-	-
	Lele11g1045	586	CDD	homeodomain	265	326	IPR001356	GO:0003677
	Lele11g1045	586	Pfam	Associated with HOX	73	216	IPR006563	-
	Lele11g1045	586	SUPERFAMILY	Homeodomain-like	266	332	IPR009057	-
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	100	145	-	-
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	426	445	-	-
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	100	114	-	-
	Lele11g1045	586	SMART	prehox3	67	217	IPR006563	-
	Lele11g1045	586	Pfam	Homeobox KN domain	282	321	IPR008422	GO:0003677\|GO:0006355
	Lele11g1045	586	ProSiteProfiles	'Homeobox' domain profile.	262	325	IPR001356	GO:0003677
	Lele11g1045	586	Coils	Coil	149	169	-	-
	Lele11g1045	586	Gene3D	-	261	340	-	-
	Lele11g1045	586	MobiDBLite	consensus disorder prediction	347	409	-	-
	Lele11g1045	586	SMART	HOX_1	265	329	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g1045	Lele-ChrLele11	17688291	17691257	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g1045	6	586	Homeobox Transcription Factor Family	AT2G35940	43.137	2.76e-121	372

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele11g1045		POX	2.5e-49	No_clan