Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1043 ATGGATGAAATCGATGTTCCTTCTCATTTTCTCTGCCCCATTTCCTTGCAGCTTATGAGAGACCCGGTCACGGTTTGCACCGGAATCACTTACGATAGAGAAAACATTGAAACATGGCTGTTTACATGCAAGGACAGAACGTGCCCAGTGACGAAACAATCCATTTTAGATACAGATCTCACCCCTAACCACACGCTTCGACGTCTGATTCAAGCTTGGTGCACTCTCAACGCCTCGTTCGGGATCGAGCGGATTCCGACACCGAAGCCGGCCATCGACAAAACCCAGATCACCAAACTCCTCTCTGAAGCAAACCAGTCCCCTCACAACCACCTCAAATGTCTCACAAGGCTTCGATCCATCGCCTTCGAAAGCGACAGGAACAAGATTTATTTGGAGTCTGCAGGGGCAATAGAGTTCTTGGCTTCAACCTTGAAATTTAGTACTAGAGCCACCCAACTCAACCACGATCATGATGAAGAATATACTTCCGTTATAGGTAATGAAACAGCACTTGAGGTTCTGTATCATCTAAATCCTTCAGAATCTCACATTAAAAACCTAGTAAGCAACGAGGGGATTAAATTCATCGACTCCTTGATCCAAATCCTAAGGAACGGGAACTACCAATCACGAGCTTATGCGACAATATTACTGAAATCAGCGTTGGGAGTGTCAGATCCAAGCCAACTGATCAATGTGAGAACTGAACTGTTCGTGGAGCTCATGAGAGTGTTACGAGATAAGATTTCACAGCAAGCTTCAAAGACAGCGTTGAAGCTAGTGGTGGAGCTGTGTCCATGGGGGAAGAACAGAATCAAAGCGGTGGAAGGAGGCGTCGCTTTGGTGCTGATCGAGATGCTTCTAGAAGCATCGGAGAGAAGAGCGTGTGAACTGATTCTGATAGCGTTAGATCAGCTGTGTGGGTGTGCGGAAGGAAGAGCGGAGTTGCTGAAGCACGGTGCCGGAGTCGCCATTATATCGAAGAAGATTCTGAGGGTATCACACGTGGCAACGGATAGAGGGGTGAAGATATTGAGCTCAATCTGTAGGTATTCGGCGAATGCGAAGGTGGTTCAGGAAATGTTGCAGGTGGGTGCAGTTTGTAAGCTGTGTTTGGTGATGCAAGTGGAAACGAGCTTGAAGACGAAGGAGAGGGCAAAGGAGGTTCTGAAATTGCACTCTAACGTTTGGAGGAATTCAGCTTGTATTCCTCATCCTTTGTTCCAATCCTATCCTTCATCATGA 1248 0.4688 MDEIDVPSHFLCPISLQLMRDPVTVCTGITYDRENIETWLFTCKDRTCPVTKQSILDTDLTPNHTLRRLIQAWCTLNASFGIERIPTPKPAIDKTQITKLLSEANQSPHNHLKCLTRLRSIAFESDRNKIYLESAGAIEFLASTLKFSTRATQLNHDHDEEYTSVIGNETALEVLYHLNPSESHIKNLVSNEGIKFIDSLIQILRNGNYQSRAYATILLKSALGVSDPSQLINVRTELFVELMRVLRDKISQQASKTALKLVVELCPWGKNRIKAVEGGVALVLIEMLLEASERRACELILIALDQLCGCAEGRAELLKHGAGVAIISKKILRVSHVATDRGVKILSSICRYSANAKVVQEMLQVGAVCKLCLVMQVETSLKTKERAKEVLKLHSNVWRNSACIPHPLFQSYPSS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1043 415 SUPERFAMILY ARM repeat 99 386 IPR016024 -
Lele11g1043 415 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Lele11g1043 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Lele11g1043 415 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lele11g1043 415 PANTHER WDSAM1 PROTEIN 3 405 IPR045185 GO:0061630
Lele11g1043 415 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Lele11g1043 415 Gene3D - 95 404 IPR011989 -
Lele11g1043 415 SUPERFAMILY RING/U-box 3 77 - -
Lele11g1043 415 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Lele11g1043 415 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1043 Lele-ChrLele11 17636976 17638223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1043 1 414 U-box Gene Family AT3G52450 51.370 2.52e-153 439