Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1040 ATGGGAGAGACAAACCCTACCGCTGATGAGGACTTACTTCTCAAGAACTTCTTCGCCGAAGTCAGCGAAGTTGAGCGAGACAACGAAGTCGCTAGGATTCTCTCTTGTTTTAAGCTGAACCCATTTGAGCATCTAAAGCTTCCATTTGATTCATCACTTGATGATGTAAAAAAGCAGTACCGCAAGTTGTCATTGATGGTTCACCCTGATAAATGCAAGCATCCACAAGCAAAGGAAGCCTTTGGAGCATTAGCAAAAGCTCAACAATTGTTACTTGATCAAAATGAAAGAGATTACATTCTCAGCCAAGTTAATTCAGCGAAAGAGGAGCTTAGAGCCAAGAGGAAGAAGCAATTGAAGAAAGATACTGCGTCAAAAATCAAGTCATTGGTAGAAGAGGGAAAATATGATCAACAATACGAACGATCTGAGGAATTCCATCAGGAGCTTAGAATCAAGGTCCGGGAGCTATTGACAGAACAAGAATGGAGGAGAAGAAAAATGCAAATGAGGATATCAGAGGAGGAAGGCAGACTAAAACGGGAAGAAGAGGAACAGAAGGAGATGTGGAAAAGAAAGCGTGAACATGAGGAGCAGTGGGAAGGAACGAGGGAACAAAGAGTATCCAGTTGGAGAGATTTTATGAAGGCCGGGAAGAAGGGTAAGAAAGGAGAGATTCGCCCTCCAAAGCTCAAGACCGAAGATCCCAACAAATCCTACGTTCAGAGGCCTGTGAAGCGAGGTTAG 747 0.4351 MGETNPTADEDLLLKNFFAEVSEVERDNEVARILSCFKLNPFEHLKLPFDSSLDDVKKQYRKLSLMVHPDKCKHPQAKEAFGALAKAQQLLLDQNERDYILSQVNSAKEELRAKRKKQLKKDTASKIKSLVEEGKYDQQYERSEEFHQELRIKVRELLTEQEWRRRKMQMRISEEEGRLKREEEEQKEMWKRKREHEEQWEGTREQRVSSWRDFMKAGKKGKKGEIRPPKLKTEDPNKSYVQRPVKRG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1040 248 CDD DnaJ 40 93 IPR001623 -
Lele11g1040 248 PRINTS DnaJ domain signature 42 60 IPR001623 -
Lele11g1040 248 PRINTS DnaJ domain signature 76 96 IPR001623 -
Lele11g1040 248 PRINTS DnaJ domain signature 60 75 IPR001623 -
Lele11g1040 248 Gene3D DnaJ domain 18 100 IPR036869 -
Lele11g1040 248 ProSiteProfiles dnaJ domain profile. 40 96 IPR001623 -
Lele11g1040 248 Pfam DnaJ domain 41 97 IPR001623 -
Lele11g1040 248 SMART dnaj_3 39 96 IPR001623 -
Lele11g1040 248 PANTHER J DOMAIN-CONTAINING PROTEIN SPF31 2 248 - -
Lele11g1040 248 Coils Coil 101 121 - -
Lele11g1040 248 SUPERFAMILY Chaperone J-domain 37 98 IPR036869 -
Lele11g1040 248 MobiDBLite consensus disorder prediction 174 248 - -
Lele11g1040 248 Coils Coil 165 199 - -
Lele11g1040 248 MobiDBLite consensus disorder prediction 174 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1040 Lele-ChrLele11 17592610 17595727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1040 19 99 Miscellaneous Gene Families AT1G16680 40.230 3.34e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1039 09 19568285 19571390 Lele11g1040 11 17592610 17595727 hybridization
Lele10g0991 10 21275510 21279173 Lele11g1040 11 17592610 17595727 hybridization