Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1035 ATGGATCCCTTAATCCGCAAGCTGCGCCGCCGTCTCCTTGCATGGCTTCACCGATCTCGCTCTGATCAAATATACTTTATGAGGCGACTTTCATACAAGGATGTTAAAAGAGCAACGGATGATTTTCACAGAATTATCTATAGCAATTCTCAAGTTGCTGCATATACCGCCAAATTTGAAGATGGTAGCGTTTCTTTGGTGAAAGAAATAAAGGATTTTGATCAAGCAGATGATATTTTCTGCAGCGAAGTGCAATTCTTGGGCCGCTTGCATCATCGACACCTATTGTCACTCAAAGGATTTTCCTTCAAACATAAGAGATTGCTCATTTTTGACAGCATAGAGAATGGAAGCTTAAAGGATCATCTAAATGATCCCTTGAGGACACCCTTAAATTGGAGGACAAGGTTACAGATAGCTATTGGTGTTGTGGCAGCCCTGGAATACTTGTTTCTCTTCGTTGAACAACCATTATGTCATGTCTCCATCAGCTCTAGCAATATCATGTTAGATGATAATTTTACAGCTAAACTATCTGATTTTGGCCTTCTTACTTGTGTTGGAAACCCCGTTATGATGCCGAATTCAAAAGATGACAGCATGAGGCAGAAAAGTGGTAACATAATTTTCCAATTGGGAGTTTTCATACTGGAGCTTGTCACTGGTCAATCTTCAGAGATGGAAGGTTCAGATATAATAGAATGGATCCAGGAATCACGCTTCTACAGTTCCATTGATAAGATGGTAGACCCGGATCTTGGCGACAATTACGATTCTAGTGAGATGAAAACCCTTCTAGCTGTTGCAAAGTTATGTATCAAATCAAGGGACAAGCCTGTATTTACAATCTCCCAGTTATTTAGGTATCTTCAACAGAAAGTAGATATTCCTCGTGACTAA 900 0.4 MDPLIRKLRRRLLAWLHRSRSDQIYFMRRLSYKDVKRATDDFHRIIYSNSQVAAYTAKFEDGSVSLVKEIKDFDQADDIFCSEVQFLGRLHHRHLLSLKGFSFKHKRLLIFDSIENGSLKDHLNDPLRTPLNWRTRLQIAIGVVAALEYLFLFVEQPLCHVSISSSNIMLDDNFTAKLSDFGLLTCVGNPVMMPNSKDDSMRQKSGNIIFQLGVFILELVTGQSSEMEGSDIIEWIQESRFYSSIDKMVDPDLGDNYDSSEMKTLLAVAKLCIKSRDKPVFTISQLFRYLQQKVDIPRD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1035 299 PANTHER OS01G0253100 PROTEIN 25 294 IPR045271 -
Lele11g1035 299 ProSiteProfiles Protein kinase domain profile. 32 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1035 299 Gene3D Transferase(Phosphotransferase) domain 1 209 298 - -
Lele11g1035 299 Gene3D Transferase(Phosphotransferase) domain 1 114 208 - -
Lele11g1035 299 FunFam Protein kinase superfamily protein 16 112 - -
Lele11g1035 299 Pfam Protein tyrosine and serine/threonine kinase 66 187 IPR001245 GO:0004672|GO:0006468
Lele11g1035 299 Gene3D Phosphorylase Kinase; domain 1 11 112 - -
Lele11g1035 299 SUPERFAMILY Protein kinase-like (PK-like) 23 266 IPR011009 -
Lele11g1035 299 FunFam probable receptor-like protein kinase At1g49730 209 298 - -
Lele11g1035 299 FunFam Protein kinase superfamily protein 114 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1035 Lele-ChrLele11 17538916 17541568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1035 11 295 Receptor kinase-like Gene Family AT3G19300 37.540 1.45e-60 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Lele11g1035 PK_Tyr_Ser-Thr 1.8e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1035 11 17538916 17541568 Lele29g0411 29 2509101 2518317 CCT
Lele11g1035 11 17538916 17541568 Lele30g1001 30 13450421 13459435 CCT
Lele11g1035 11 17538916 17541568 Lele31g1134 31 17965176 17974785 CCT
Lele11g1035 11 17538916 17541568 Lele32g0390 32 2462757 2471695 CCT
Lele09g1033 09 19512196 19514863 Lele11g1035 11 17538916 17541568 hybridization
Lele10g0986 10 21171209 21174051 Lele11g1035 11 17538916 17541568 hybridization